Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RPL7P47-201ENST00000497299 556 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC11O43248 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC11O43248 AC026403.1-201ENST00000518938 295 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC11O43248 MIR3915-201ENST00000578518 97 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 WISP1-OT1-201ENST00000602893 642 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 Z99497.2-201ENST00000603634 310 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AC121247.2-201ENST00000604776 136 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 BCRP9-201ENST00000605312 388 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AC244258.1-201ENST00000637553 1071 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC11O43248 AC012321.1-201ENST00000561622 1588 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXC11O43248 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXC11O43248 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
HOXC11O43248 RPS3AP24-201ENST00000407896 734 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 RNA5SP44-201ENST00000410446 133 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 RNU6-516P-201ENST00000411381 104 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXC11O43248 TPMTP3-201ENST00000411928 735 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXC11O43248 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 Z74696.2-201ENST00000436514 498 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 SKP1P1-201ENST00000438081 489 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 RANP8-201ENST00000444720 713 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AC007967.1-201ENST00000455422 1159 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXC11O43248 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXC11O43248 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AC006499.5-201ENST00000505037 514 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 RNU1-95P-201ENST00000516357 160 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 RNU1-128P-201ENST00000516704 160 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 MTND4LP18-201ENST00000526864 291 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXC11O43248 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 GTF2IP22-201ENST00000554443 182 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 AC109446.2-201ENST00000567872 497 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXC11O43248 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC11O43248 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXC11O43248 AL450472.3-201ENST00000615578 367 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AL159972.1-201ENST00000625150 448 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AL773545.4-201ENST00000637262 310 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 AL513478.4-201ENST00000641636 310 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
HOXC11O43248 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXC11O43248 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HOXC11O43248 ZNF285B-201ENST00000561698 1767 ntBASIC3.97□□□□□ -1.77
HOXC11O43248 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
HOXC11O43248 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.77
HOXC11O43248 CCT4P2-201ENST00000233836 1548 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC11O43248 PABPC1P9-201ENST00000426076 1612 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC11O43248 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC11O43248 MIR423-201ENST00000362201 94 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 RNA5SP295-201ENST00000362655 121 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXC11O43248 SNORA5A-201ENST00000384111 134 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 HMGN1P24-201ENST00000412282 298 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC11O43248 AL159169.1-201ENST00000421119 127 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC11O43248 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC11O43248 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 AF228730.2-201ENST00000438784 848 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AL662791.1-201ENST00000441992 928 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC11O43248 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXC11O43248 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC11O43248 HMGN2P16-201ENST00000456802 261 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC108860.1-201ENST00000484521 383 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC010486.3-201ENST00000511602 785 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AC105914.1-201ENST00000511798 226 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 RNA5SP164-201ENST00000516533 110 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC11O43248 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC125611.2-201ENST00000551907 647 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 MED28P6-201ENST00000558776 231 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AF131215.7-201ENST00000602443 707 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AP000403.1-201ENST00000603349 851 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AP002826.1-201ENST00000608835 315 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AC022079.1-201ENST00000621546 602 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AC243312.2-201ENST00000623340 601 ntBASIC3.96□□□□□ -1.78
HOXC11O43248 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC11O43248 AC093591.3-201ENST00000634516 308 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms