Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC009063.1-201ENST00000563342 702 ntBASIC2.05□□□□□ -2.08
SCN3AQ9NY46 U73479.1-201ENST00000618062 168 ntBASIC2.05□□□□□ -2.08
SCN3AQ9NY46 AC110994.2-201ENST00000635481 492 ntBASIC2.05□□□□□ -2.08
SCN3AQ9NY46 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 RNU6-799P-201ENST00000363567 107 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 SNORA64-201ENST00000384674 134 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 RNU6-244P-201ENST00000391028 104 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC027673.1-201ENST00000456245 405 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC025857.1-201ENST00000525252 377 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AP000916.1-201ENST00000533869 835 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 YWHAZP1-201ENST00000556286 722 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 ZNF92P3-201ENST00000596594 954 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AL136164.4-201ENST00000625013 2135 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 CU459211.1-201ENST00000635667 749 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 AC005336.3-201ENST00000623833 2679 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 ZNF37BP-203ENST00000452306 1352 ntBASIC2.04□□□□□ -2.08
SCN3AQ9NY46 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
SCN3AQ9NY46 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 RNU6-600P-201ENST00000362524 99 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 SNORA48.3-201ENST00000391081 134 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HSPE1P1-201ENST00000421494 318 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC010095.1-201ENST00000443543 144 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 RPL34P26-201ENST00000445636 354 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 MIR1273D-201ENST00000577266 86 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 MIR5002-201ENST00000584713 97 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AP001029.3-201ENST00000588063 596 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AL049779.4-201ENST00000604500 156 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC011374.2-201ENST00000607135 526 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AL138880.2-201ENST00000616214 239 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC123912.3-201ENST00000600907 1367 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC007256.1-201ENST00000392253 2765 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 RPL23AP39-201ENST00000415533 405 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 NPM1P11-201ENST00000417106 855 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HMGN2P3-201ENST00000433603 273 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HMGN2P5-201ENST00000436882 273 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AL513124.1-201ENST00000450410 614 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC010301.1-201ENST00000473936 355 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC022690.1-201ENST00000526681 550 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC087241.2-201ENST00000535801 324 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 KC877982.1-201ENST00000602313 470 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HMGB1P51-201ENST00000605166 638 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 HSPE1P14-201ENST00000605812 302 ntBASIC2.03□□□□□ -2.08
SCN3AQ9NY46 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.03□□□□□ -2.08
SCN3AQ9NY46 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 AL136520.1-201ENST00000600311 1322 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 RNU6-819P-201ENST00000364116 107 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 SNORD56.5-201ENST00000364281 72 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 GSTA9P-201ENST00000406231 611 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 RPL21P32-201ENST00000419877 477 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 AC023424.2-201ENST00000493479 777 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 AC131902.3-201ENST00000611767 581 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 MIR6864-201ENST00000617935 70 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 MIR219B-201ENST00000637023 88 ntBASIC2.02□□□□□ -2.09
SCN3AQ9NY46 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
SCN3AQ9NY46 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RNU6-335P-201ENST00000364563 113 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RPS3AP26-201ENST00000398259 784 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 SNORA11.4-201ENST00000408823 129 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC004022.2-201ENST00000413824 193 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms