Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC010683.1-201ENST00000473673 378 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC025164.1-201ENST00000496249 478 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 KLHL2P1-201ENST00000508691 521 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 RN7SKP219-201ENST00000516825 296 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 FKBP1BP1-201ENST00000553366 325 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AP001029.3-201ENST00000588063 596 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AP000942.4-201ENST00000604811 241 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC138965.3-201ENST00000623875 498 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 MUC2-202ENST00000613187 4845 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 MTND4P27-201ENST00000450813 1354 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC073343.1-201ENST00000328239 651 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.184-201ENST00000363884 108 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 RPL21P67-201ENST00000402896 478 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 RPS7P15-201ENST00000415804 584 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 HSPE1P1-201ENST00000421494 318 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 REREP1Y-201ENST00000422655 198 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 HMGN2P27-201ENST00000427352 270 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 REREP2Y-201ENST00000439103 200 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 PPP1R2P5-201ENST00000457256 603 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 RPL7L1P8-201ENST00000469911 741 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC116562.3-201ENST00000506136 177 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC016065.2-201ENST00000514530 444 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 RN7SKP116-201ENST00000516902 319 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 RPL23AP53-201ENST00000521854 457 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AP000827.1-201ENST00000527814 258 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC068587.5-201ENST00000528506 175 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AP000857.1-201ENST00000532151 543 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 SCOCP1-201ENST00000554676 349 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC025884.1-201ENST00000556034 378 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC025588.3-201ENST00000604182 274 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AL121992.2-201ENST00000606262 256 ntBASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC87Q9NVE4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AL139276.1-201ENST00000311910 1001 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC067945.1-201ENST00000342609 618 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 RN7SKP224-201ENST00000364140 325 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.615-201ENST00000410769 117 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 TMSB10P2-201ENST00000416049 131 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 RPS26P47-201ENST00000427219 348 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 OR2AS1P-201ENST00000427827 319 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC024082.2-201ENST00000434771 238 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 RPL21P99-201ENST00000480369 423 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 RN7SL810P-201ENST00000493031 276 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 MTCO1P29-201ENST00000496868 288 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC068305.1-201ENST00000497406 726 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC128657.1-201ENST00000549459 145 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC009852.2-201ENST00000567898 485 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 MIR4775-201ENST00000581168 75 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC008638.3-201ENST00000603341 463 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 LLPHP1-201ENST00000603571 367 ntBASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC87Q9NVE4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 137.1 ms