Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.58□□□□□ -1.84
USP28Q96RU2 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.58□□□□□ -1.84
USP28Q96RU2 PRELID3BP8-201ENST00000604148 295 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AL358072.1-201ENST00000604156 575 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 DPRXP5-201ENST00000604662 539 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.58□□□□□ -1.84
USP28Q96RU2 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC103706.2-201ENST00000638080 240 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
USP28Q96RU2 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 SGO1P2-201ENST00000429458 1589 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP28Q96RU2 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP28Q96RU2 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
USP28Q96RU2 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 RNU4-72P-201ENST00000410754 173 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC073264.1-201ENST00000411508 416 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AC092634.6-201ENST00000418558 192 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 MTND5P31-201ENST00000419366 1374 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC005300.1-201ENST00000428401 373 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.57□□□□□ -1.84
USP28Q96RU2 SLC31A1P1-201ENST00000451221 567 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 UQCRHP3-201ENST00000451503 251 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AP002884.2-201ENST00000471647 395 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.57□□□□□ -1.84
USP28Q96RU2 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 RNU6-488P-201ENST00000515918 99 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 RNY4P37-201ENST00000516225 96 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 SNORA67.7-201ENST00000516664 135 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 RNU6-759P-201ENST00000516740 103 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.57□□□□□ -1.84
USP28Q96RU2 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 CCNG2P1-201ENST00000549521 1000 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 NCAPGP2-201ENST00000557911 754 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.57□□□□□ -1.84
USP28Q96RU2 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.57□□□□□ -1.84
USP28Q96RU2 MIR3158-1-201ENST00000583596 81 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.57□□□□□ -1.84
USP28Q96RU2 VN1R90P-201ENST00000595717 726 ntBASIC3.57□□□□□ -1.84
USP28Q96RU2 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
USP28Q96RU2 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.57□□□□□ -1.84
USP28Q96RU2 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.57□□□□□ -1.84
USP28Q96RU2 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP28Q96RU2 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.56□□□□□ -1.84
USP28Q96RU2 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
USP28Q96RU2 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP28Q96RU2 RNU6-1066P-201ENST00000363573 105 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 SUGT1P1-201ENST00000379514 476 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 RNU6-657P-201ENST00000383904 107 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 RNU6-444P-201ENST00000383988 108 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 MIR183-201ENST00000384958 110 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC110754.1-201ENST00000399740 601 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AL356131.1-201ENST00000405826 414 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.56□□□□□ -1.84
USP28Q96RU2 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.56□□□□□ -1.84
USP28Q96RU2 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP28Q96RU2 AL590103.1-201ENST00000434488 307 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 SETP8-201ENST00000435341 628 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 CDC27P1-201ENST00000445384 715 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 CYCSP35-201ENST00000451978 304 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 PNPLA4P1-201ENST00000458328 305 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC091153.1-201ENST00000466297 402 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC087879.1-201ENST00000474343 374 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 RPL7P18-201ENST00000478965 734 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 RN7SL20P-201ENST00000488827 297 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 RNF138P1-201ENST00000502765 546 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.56□□□□□ -1.84
USP28Q96RU2 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP28Q96RU2 ELOCP32-201ENST00000548625 324 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC011611.1-201ENST00000552179 197 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC135628.1-201ENST00000568867 534 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.56□□□□□ -1.84
USP28Q96RU2 OR4G1P-201ENST00000588632 938 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms