Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRERF1Q96PN7 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.02□□□□□ -1.45
TRERF1Q96PN7 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.02□□□□□ -1.45
TRERF1Q96PN7 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 THAP12P4-201ENST00000528321 2266 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC011755.1-201ENST00000623763 2049 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 SMG1P7-201ENST00000565246 2704 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RNA5SP90-201ENST00000364801 99 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RNU6-746P-201ENST00000384112 109 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 MIR1182-201ENST00000408363 97 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RNU6-1050P-201ENST00000410388 107 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 POLHP1-201ENST00000411806 470 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RPS17P8-201ENST00000434525 335 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 PPIAP13-201ENST00000434706 478 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 TIMM9P1-201ENST00000436122 256 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AL772161.1-201ENST00000439130 476 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC005297.2-201ENST00000450430 606 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 MTND4LP30-201ENST00000454092 297 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 FO393415.2-201ENST00000480085 343 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RPL21P93-201ENST00000480465 489 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC005912.1-201ENST00000495392 255 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 MTCO3P44-201ENST00000510977 541 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.708-201ENST00000516950 96 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RNU6-182P-201ENST00000516970 105 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AC093799.2-201ENST00000610062 578 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 AL159972.1-201ENST00000625150 448 ntBASIC6.01□□□□□ -1.45
TRERF1Q96PN7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRERF1Q96PN7 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6□□□□□ -1.45
TRERF1Q96PN7 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6□□□□□ -1.45
TRERF1Q96PN7 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6□□□□□ -1.45
TRERF1Q96PN7 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
TRERF1Q96PN7 RNA5SP123-201ENST00000363244 119 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.380-201ENST00000365663 111 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 EIF4E2P1-201ENST00000393781 255 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TRERF1Q96PN7 HMGB3P7-201ENST00000400214 611 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.594-201ENST00000410373 140 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 AC068533.1-201ENST00000418542 415 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC6□□□□□ -1.45
TRERF1Q96PN7 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6□□□□□ -1.45
TRERF1Q96PN7 RPS29P10-201ENST00000439197 166 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC093156.1-201ENST00000440382 670 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC114495.1-201ENST00000441274 436 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC011816.1-201ENST00000441346 546 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC6□□□□□ -1.45
TRERF1Q96PN7 FTH1P25-201ENST00000447665 469 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC6□□□□□ -1.45
TRERF1Q96PN7 HMGB3P30-201ENST00000457863 606 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 snoU13.20-201ENST00000459180 104 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC090686.1-201ENST00000481577 749 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC020893.1-201ENST00000502452 580 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC114801.2-201ENST00000503825 781 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC116337.1-201ENST00000509680 687 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 IGHV3-76-201ENST00000522465 295 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AC135001.1-201ENST00000544546 283 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
TRERF1Q96PN7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC6□□□□□ -1.45
TRERF1Q96PN7 AC068790.3-201ENST00000602988 553 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AL162431.4-201ENST00000604674 411 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 FTX_2.1-201ENST00000618816 94 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AP001784.1-201ENST00000624107 428 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 AL353662.3-201ENST00000625131 237 ntBASIC6□□□□□ -1.45
TRERF1Q96PN7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TRERF1Q96PN7 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
TRERF1Q96PN7 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms