Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.46-201ENST00000362695 102 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.157-201ENST00000363638 102 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 MIR23A-201ENST00000385245 73 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AL356432.1-201ENST00000405809 419 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 RNU6ATAC-201ENST00000408749 126 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 MTATP6P18-201ENST00000417994 673 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 RPS11P1-201ENST00000451072 473 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 RPL7P15-201ENST00000461190 712 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC110792.1-201ENST00000491826 472 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 TRMT10BP1-201ENST00000519377 943 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC243972.3-201ENST00000539655 198 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC034105.3-201ENST00000565294 442 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC055876.1-202ENST00000567053 138 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 MIR4472-2-201ENST00000582069 67 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC110743.1-201ENST00000584870 478 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 MIR6868-201ENST00000611215 58 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC002550.2-201ENST00000621246 394 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC138649.5-201ENST00000637456 137 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AC022893.2-201ENST00000564832 3296 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 AL645937.1-201ENST00000641739 1652 ntBASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 RPL23AP57-201ENST00000332361 466 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 SNORA73.2-201ENST00000364946 201 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-444P-201ENST00000383988 108 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 RPS4XP8-201ENST00000402039 771 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 SAR1AP4-201ENST00000429225 591 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 MTCO3P21-201ENST00000430791 643 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL365400.1-201ENST00000431854 640 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 HMGB3P9-201ENST00000441799 583 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC022431.1-201ENST00000450941 438 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC093278.1-201ENST00000494700 600 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC108145.1-201ENST00000503770 153 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC104986.1-201ENST00000517978 436 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC022616.6-201ENST00000520479 119 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 COX6CP8-201ENST00000522620 226 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AP003072.1-201ENST00000531740 145 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 HPRT1P3-201ENST00000539521 576 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC093027.1-201ENST00000546698 429 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AC011611.1-201ENST00000552179 197 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL121821.2-201ENST00000556081 394 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 MAGOH2P-202ENST00000584384 429 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 RN7SL435P-201ENST00000584418 282 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 MAPK10-304ENST00000641341 3984 ntBASIC5.45□□□□□ -1.54
USHBP1Q8N6Y0 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 Z82217.1-201ENST00000625157 8149 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-984P-201ENST00000363236 109 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNA5SP387-201ENST00000364226 106 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-730P-201ENST00000383954 104 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.431-201ENST00000384086 102 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-456P-201ENST00000384493 107 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNA5SP44-201ENST00000410446 133 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms