Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 DEFB108F-201ENST00000344638 222 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 MIR133B-201ENST00000362210 119 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 U3.3-201ENST00000362986 216 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-1085P-201ENST00000363576 107 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RNU5E-6P-201ENST00000365574 115 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.481-201ENST00000384373 102 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RNU6ATAC18P-201ENST00000408413 101 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RPS20P5-201ENST00000434808 360 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RPS29P10-201ENST00000439197 166 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL450023.3-201ENST00000440592 271 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 MTATP6P30-201ENST00000443540 664 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RN7SL799P-201ENST00000475891 298 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 OR2AO1P-201ENST00000476497 403 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 ARL4AP2-201ENST00000507378 601 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC105914.1-201ENST00000511798 226 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 FTH1P9-201ENST00000513251 355 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC010342.1-201ENST00000514047 877 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 BX510359.5-201ENST00000515651 304 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC012400.1-201ENST00000518452 381 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 OR4R1P-201ENST00000529879 463 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL512310.1-201ENST00000548639 172 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 HMGB1P33-201ENST00000563485 527 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC015912.2-201ENST00000571053 181 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.6-201ENST00000603753 252 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.11-201ENST00000604059 253 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC008162.1-201ENST00000604718 254 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC007363.1-201ENST00000604736 620 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.1-201ENST00000604752 252 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RBM11P1-201ENST00000604951 799 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.5-201ENST00000605253 252 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.12-201ENST00000605291 253 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.8-201ENST00000605353 252 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AL670379.7-201ENST00000605823 252 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC000068.2-201ENST00000608816 460 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 MIR486-1-201ENST00000612171 68 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC004696.1-201ENST00000614345 607 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC010133.1-201ENST00000615809 842 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC005609.4-201ENST00000625071 447 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 GABPAP-201ENST00000419271 1356 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC073343.1-201ENST00000328239 651 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.22-201ENST00000362492 102 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RNU5A-1-201ENST00000362698 116 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RNU4-12P-201ENST00000365233 139 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 SNORA36C-201ENST00000384289 132 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 BTF3P7-201ENST00000407097 488 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RAC1P6-201ENST00000423911 575 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC008850.1-201ENST00000427546 362 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 VDAC1P3-201ENST00000434069 851 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 CYCSP6-201ENST00000434498 302 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AL390119.1-201ENST00000440329 312 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 GAPDHP27-201ENST00000447427 1020 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RAD23BP3-201ENST00000454157 1152 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RNU7-170P-201ENST00000459303 61 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RN7SL717P-201ENST00000478343 297 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 HSPE1P6-201ENST00000479457 291 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RN7SL432P-201ENST00000484057 298 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC104109.1-201ENST00000498563 436 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-718P-201ENST00000516166 105 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms