Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC109583.1-201ENST00000432156 268 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RPS6P12-201ENST00000432491 726 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 OR6K1P-201ENST00000456766 971 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 BTF3P5-201ENST00000457252 467 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 HMGB3P30-201ENST00000457863 606 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RN7SL585P-201ENST00000470538 280 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC116337.2-201ENST00000477662 156 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RPL32P34-201ENST00000486380 400 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AP001025.2-201ENST00000490908 477 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC078817.1-201ENST00000492623 435 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL024509.2-201ENST00000493462 493 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 RNU6-352P-201ENST00000516908 107 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC013828.2-201ENST00000532487 235 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC023161.2-201ENST00000551218 780 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL137843.1-201ENST00000605078 385 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC128687.1-201ENST00000605304 619 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 OR2AS2P-201ENST00000606902 342 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC005344.1-201ENST00000613391 459 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 MIR7702-201ENST00000621931 59 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 Z69908.1-201ENST00000622603 247 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AL356585.4-201ENST00000623078 1229 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CRYM-AS1-204ENST00000637983 556 ntBASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.81□□□□□ -1.8
COL28A1Q2UY09 AC116667.1-201ENST00000604855 2072 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC021755.1-201ENST00000559747 1447 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC010733.2-201ENST00000589496 5702 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RNU6-335P-201ENST00000364563 113 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RN7SKP284-201ENST00000411002 343 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RHEBP3-201ENST00000411920 351 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC099677.1-201ENST00000420575 175 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 MTND4LP10-201ENST00000435146 291 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RPL37P21-201ENST00000435890 276 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 TRIM60P18-201ENST00000441518 828 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RPS4XP4-201ENST00000443195 763 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 FABP3P2-201ENST00000453169 399 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC106707.2-201ENST00000484182 374 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RPL7P23-201ENST00000493874 747 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 RFPL1S-203ENST00000539579 330 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC018630.1-201ENST00000541376 925 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC087499.8-201ENST00000578406 226 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AP005136.1-201ENST00000579765 429 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 MIR4307-201ENST00000582802 84 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC244505.7-201ENST00000599675 272 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 AC064801.1-201ENST00000612025 407 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 MIR486-1-201ENST00000612171 68 ntBASIC3.8□□□□□ -1.8
COL28A1Q2UY09 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.8□□□□□ -1.8
COL28A1Q2UY09 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 HSPA8P1-201ENST00000425843 1833 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RNU4-91P-201ENST00000364778 135 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RPS3AP26-201ENST00000398259 784 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL356421.1-201ENST00000403255 413 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 MIR1183-201ENST00000408856 89 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RNU6-712P-201ENST00000410558 100 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC092447.6-201ENST00000414578 210 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC096638.2-201ENST00000434965 711 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC108734.1-201ENST00000439549 399 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL356535.1-201ENST00000440335 398 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RAD23BP3-201ENST00000454157 1152 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms