Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 ZNF519P1-201ENST00000449011 1626 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SOX4Q06945 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SOX4Q06945 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SOX4Q06945 Y_RNA.153-201ENST00000363615 91 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 RNU6-593P-201ENST00000364716 112 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SOX4Q06945 Y_RNA.556-201ENST00000384677 113 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC013442.1-201ENST00000397347 228 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 RN7SKP216-201ENST00000411050 312 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC069218.2-201ENST00000411665 344 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 COX5BP7-201ENST00000414780 274 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 TBCAP2-201ENST00000416175 326 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 PDSS1P1-201ENST00000422953 1114 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL669831.1-202ENST00000428504 417 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX4Q06945 RPL12P18-201ENST00000437175 325 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 RPL7P28-201ENST00000437739 740 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX4Q06945 RPL23AP89-201ENST00000439324 255 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 SUMO1P3-201ENST00000439961 304 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AURKAPS2-201ENST00000454983 333 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 RPS29P33-201ENST00000456717 146 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX4Q06945 RPL21P93-201ENST00000480465 489 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL139099.1-201ENST00000497398 403 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC008526.1-201ENST00000509149 338 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX4Q06945 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC135001.1-201ENST00000544546 283 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC005357.1-201ENST00000588399 301 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL365434.2-201ENST00000607979 234 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 MIR6820-201ENST00000611508 62 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 FAM157A-202ENST00000615155 405 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL355365.1-201ENST00000616480 294 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC010378.1-201ENST00000619270 362 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AL357559.1-201ENST00000622228 274 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC063976.2-201ENST00000425667 3556 ntBASIC5.3□□□□□ -1.56
SOX4Q06945 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SOX4Q06945 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX4Q06945 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX4Q06945 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX4Q06945 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX4Q06945 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SOX4Q06945 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX4Q06945 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SOX4Q06945 RNU6-1287P-201ENST00000362914 107 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 Y_RNA.80-201ENST00000362996 102 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 RN7SKP115-201ENST00000363177 317 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX4Q06945 RNU6-1060P-201ENST00000384664 107 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL136372.1-201ENST00000403060 228 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL391417.1-201ENST00000404100 426 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 Y_RNA.625-201ENST00000411256 107 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AC114491.1-201ENST00000416095 246 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX4Q06945 AL354766.1-201ENST00000423396 542 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX4Q06945 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX4Q06945 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX4Q06945 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX4Q06945 CEACAMP4-201ENST00000457676 421 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 RNU7-59P-201ENST00000459101 61 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 RN7SL809P-201ENST00000482040 297 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX4Q06945 AP001880.2-201ENST00000538233 448 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 BNIP3P1-201ENST00000547295 580 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX4Q06945 AC113195.1-201ENST00000579952 141 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AC024619.4-201ENST00000580924 316 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL354984.3-201ENST00000604803 325 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 AL391358.1-201ENST00000605342 190 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX4Q06945 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX4Q06945 AL138726.1-201ENST00000614873 333 ntBASIC5.29□□□□□ -1.56
SOX4Q06945 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX4Q06945 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms