Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC009314.1-201ENST00000603871 304 ntBASIC3.1□□□□□ -1.91
CUX1P39880 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.09□□□□□ -1.91
CUX1P39880 AC009302.1-201ENST00000417147 390 ntBASIC3.09□□□□□ -1.91
CUX1P39880 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.09□□□□□ -1.91
CUX1P39880 AC068446.3-201ENST00000555285 382 ntBASIC3.09□□□□□ -1.91
CUX1P39880 MIR8081-201ENST00000611533 95 ntBASIC3.09□□□□□ -1.91
CUX1P39880 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.09□□□□□ -1.91
CUX1P39880 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
CUX1P39880 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.09□□□□□ -1.92
CUX1P39880 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CUX1P39880 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.09□□□□□ -1.92
CUX1P39880 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
CUX1P39880 SNORA25.15-201ENST00000516487 89 ntBASIC3.09□□□□□ -1.92
CUX1P39880 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CUX1P39880 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.09□□□□□ -1.92
CUX1P39880 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.09□□□□□ -1.92
CUX1P39880 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
CUX1P39880 AL512283.1-201ENST00000606756 1384 ntBASIC3.08□□□□□ -1.92
CUX1P39880 MTND4P13-201ENST00000402078 1023 ntBASIC3.08□□□□□ -1.92
CUX1P39880 RPL23AP39-201ENST00000415533 405 ntBASIC3.08□□□□□ -1.92
CUX1P39880 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.08□□□□□ -1.92
CUX1P39880 RPL23AP20-201ENST00000447965 421 ntBASIC3.08□□□□□ -1.92
CUX1P39880 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.08□□□□□ -1.92
CUX1P39880 RPS29P12-201ENST00000460178 152 ntBASIC3.08□□□□□ -1.92
CUX1P39880 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.08□□□□□ -1.92
CUX1P39880 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.08□□□□□ -1.92
CUX1P39880 RPS3AP4-201ENST00000555161 764 ntBASIC3.08□□□□□ -1.92
CUX1P39880 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.08□□□□□ -1.92
CUX1P39880 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.08□□□□□ -1.92
CUX1P39880 ZNF271P-202ENST00000465539 1970 ntBASIC3.08□□□□□ -1.92
CUX1P39880 Y_RNA.224-201ENST00000364308 111 ntBASIC3.07□□□□□ -1.92
CUX1P39880 AC140059.1-201ENST00000489238 361 ntBASIC3.07□□□□□ -1.92
CUX1P39880 TRAV31-201ENST00000502780 342 ntBASIC3.07□□□□□ -1.92
CUX1P39880 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.07□□□□□ -1.92
CUX1P39880 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.07□□□□□ -1.92
CUX1P39880 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.07□□□□□ -1.92
CUX1P39880 AC090897.3-201ENST00000636973 1157 ntBASIC3.07□□□□□ -1.92
CUX1P39880 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.07□□□□□ -1.92
CUX1P39880 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CUX1P39880 Z82209.1-201ENST00000422141 2135 ntBASIC3.07□□□□□ -1.92
CUX1P39880 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CUX1P39880 RNU2-17P-201ENST00000410290 190 ntBASIC3.06□□□□□ -1.92
CUX1P39880 RNA5SP338-201ENST00000410495 85 ntBASIC3.06□□□□□ -1.92
CUX1P39880 AC005517.2-201ENST00000424673 553 ntBASIC3.06□□□□□ -1.92
CUX1P39880 CDC42P1-201ENST00000456658 548 ntBASIC3.06□□□□□ -1.92
CUX1P39880 TRMT112P2-201ENST00000512910 132 ntBASIC3.06□□□□□ -1.92
CUX1P39880 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.06□□□□□ -1.92
CUX1P39880 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CUX1P39880 AC103988.1-201ENST00000566382 2177 ntBASIC3.06□□□□□ -1.92
CUX1P39880 AC027514.1-201ENST00000588561 1603 ntBASIC3.06□□□□□ -1.92
CUX1P39880 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CUX1P39880 TRIAP1P1-201ENST00000427062 225 ntBASIC3.05□□□□□ -1.92
CUX1P39880 RPS7P5-201ENST00000441482 581 ntBASIC3.05□□□□□ -1.92
CUX1P39880 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.05□□□□□ -1.92
CUX1P39880 RPS27P5-201ENST00000444247 244 ntBASIC3.05□□□□□ -1.92
CUX1P39880 AL157827.1-201ENST00000447622 132 ntBASIC3.05□□□□□ -1.92
CUX1P39880 AL021397.1-201ENST00000451806 248 ntBASIC3.05□□□□□ -1.92
CUX1P39880 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.05□□□□□ -1.92
CUX1P39880 CBX3P4-201ENST00000538909 354 ntBASIC3.05□□□□□ -1.92
CUX1P39880 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.05□□□□□ -1.92
CUX1P39880 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.05□□□□□ -1.92
CUX1P39880 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CUX1P39880 KPNA2P1-201ENST00000458289 1591 ntBASIC3.05□□□□□ -1.92
CUX1P39880 SNORA67.5-201ENST00000391036 107 ntBASIC3.04□□□□□ -1.92
CUX1P39880 SNORA26.7-201ENST00000391288 122 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RPL21P75-201ENST00000396599 483 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RPL21P1-201ENST00000399532 476 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RPL21P28-201ENST00000401418 483 ntBASIC3.04□□□□□ -1.92
CUX1P39880 AL592114.1-201ENST00000403842 483 ntBASIC3.04□□□□□ -1.92
CUX1P39880 AP000275.1-201ENST00000411943 390 ntBASIC3.04□□□□□ -1.92
CUX1P39880 EIF1AXP1-201ENST00000419267 435 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RPS15AP12-201ENST00000419498 388 ntBASIC3.04□□□□□ -1.92
CUX1P39880 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.04□□□□□ -1.92
CUX1P39880 RNU7-95P-201ENST00000459222 64 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RPL21P16-201ENST00000495531 483 ntBASIC3.04□□□□□ -1.92
CUX1P39880 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CUX1P39880 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.04□□□□□ -1.92
CUX1P39880 AC103810.1-201ENST00000579873 453 ntBASIC3.04□□□□□ -1.92
CUX1P39880 RN7SL622P-201ENST00000585292 275 ntBASIC3.04□□□□□ -1.92
CUX1P39880 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CUX1P39880 SNORA50A-202ENST00000629536 136 ntBASIC3.04□□□□□ -1.92
CUX1P39880 AL139811.1-201ENST00000424779 2299 ntBASIC3.04□□□□□ -1.92
CUX1P39880 AL513331.1-201ENST00000411908 397 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AL096701.2-201ENST00000416920 238 ntBASIC3.03□□□□□ -1.92
CUX1P39880 MTCO3P21-201ENST00000430791 643 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AL590762.3-201ENST00000436372 640 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.03□□□□□ -1.92
CUX1P39880 MOB1AP2-201ENST00000446060 614 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC107393.1-201ENST00000512403 346 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC025881.1-201ENST00000518851 512 ntBASIC3.03□□□□□ -1.92
CUX1P39880 IGHV3-76-201ENST00000522465 295 ntBASIC3.03□□□□□ -1.92
CUX1P39880 MTND5P21-201ENST00000531961 522 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.03□□□□□ -1.92
CUX1P39880 VN1R74P-201ENST00000613259 503 ntBASIC3.03□□□□□ -1.92
CUX1P39880 U6.98-201ENST00000637157 84 ntBASIC3.03□□□□□ -1.92
CUX1P39880 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
CUX1P39880 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CUX1P39880 Y_RNA.112-201ENST00000363250 102 ntBASIC3.03□□□□□ -1.92
CUX1P39880 RNY1P14-201ENST00000384426 108 ntBASIC3.03□□□□□ -1.92
CUX1P39880 RPL21P2-201ENST00000440049 481 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms