Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NUP58P1-201ENST00000502546 1738 ntBASIC4.62□□□□□ -1.67
SMARCA1P28370 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.62□□□□□ -1.67
SMARCA1P28370 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMARCA1P28370 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.62□□□□□ -1.67
SMARCA1P28370 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.62□□□□□ -1.67
SMARCA1P28370 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
SMARCA1P28370 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMARCA1P28370 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.62□□□□□ -1.67
SMARCA1P28370 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.62□□□□□ -1.67
SMARCA1P28370 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.61□□□□□ -1.67
SMARCA1P28370 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 AL161781.1-201ENST00000354277 403 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RNA5SP399-201ENST00000364003 117 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RNA5SP479-201ENST00000364858 117 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 RPL7P25-201ENST00000404151 721 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RN7SKP177-201ENST00000410567 355 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AC127526.1-201ENST00000417526 366 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 TBCAP1-201ENST00000436520 327 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 MTATP6P13-201ENST00000438531 667 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RPL22P17-201ENST00000438729 315 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 MTND1P1-201ENST00000445453 368 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 SNRPGP5-201ENST00000456003 220 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC110792.1-201ENST00000491826 472 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AC020593.1-201ENST00000507399 299 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SMARCA1P28370 TXNP6-201ENST00000510190 310 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC091133.4-201ENST00000511142 308 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 RN7SKP116-201ENST00000516902 319 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RNU6-714P-201ENST00000516963 103 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 RNU2-46P-201ENST00000517038 113 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 AC008638.3-201ENST00000603341 463 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AC112230.1-201ENST00000604342 547 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AF250324.2-201ENST00000608299 610 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 SEPT14P19-203ENST00000633205 211 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 OR5AK4P-201ENST00000635912 903 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AL773545.4-201ENST00000637262 310 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AL513478.4-201ENST00000641636 310 ntBASIC4.61□□□□□ -1.67
SMARCA1P28370 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.61□□□□□ -1.67
SMARCA1P28370 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SMARCA1P28370 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SMARCA1P28370 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC090337.1-201ENST00000579651 2074 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 RNY4P24-201ENST00000362735 96 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 U8.3-201ENST00000363321 132 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 RNU6-339P-201ENST00000384310 107 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RPS3AP36-201ENST00000398190 775 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 C1DP2-201ENST00000418167 426 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 FTH1P6-201ENST00000430768 320 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC009961.2-201ENST00000435771 251 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 MTCO2P3-201ENST00000442543 421 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RPL17P49-201ENST00000443728 411 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.6□□□□□ -1.67
SMARCA1P28370 MTND1P3-201ENST00000484956 952 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RPL9P6-201ENST00000492764 598 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC034222.1-201ENST00000494052 532 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC109927.2-201ENST00000506416 303 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 RNU6-506P-201ENST00000516553 94 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AP003181.2-201ENST00000528941 181 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC136619.2-201ENST00000563361 631 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC009101.1-201ENST00000568135 242 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 MIR4286-201ENST00000580651 93 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC053481.4-201ENST00000583164 216 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms