Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.92□□□□□ -1.78
BDNFP23560 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.92□□□□□ -1.78
BDNFP23560 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AC069157.1-201ENST00000421749 137 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC008850.1-201ENST00000427546 362 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC091286.1-201ENST00000431233 461 ntBASIC3.92□□□□□ -1.78
BDNFP23560 TAAR7P-201ENST00000436141 242 ntBASIC3.92□□□□□ -1.78
BDNFP23560 MTND1P31-201ENST00000449206 961 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC006480.1-201ENST00000449887 378 ntBASIC3.92□□□□□ -1.78
BDNFP23560 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.92□□□□□ -1.78
BDNFP23560 AC098824.1-201ENST00000453565 980 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AL109741.2-201ENST00000455561 343 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.92□□□□□ -1.78
BDNFP23560 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.92□□□□□ -1.78
BDNFP23560 RNU6-798P-201ENST00000516912 103 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.92□□□□□ -1.78
BDNFP23560 AC008011.1-201ENST00000545989 227 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AC006960.3-201ENST00000561845 705 ntBASIC3.92□□□□□ -1.78
BDNFP23560 ACTR3BP3-201ENST00000565577 979 ntBASIC3.92□□□□□ -1.78
BDNFP23560 HMGB1P6-201ENST00000569046 646 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.92□□□□□ -1.78
BDNFP23560 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.92□□□□□ -1.78
BDNFP23560 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.92□□□□□ -1.78
BDNFP23560 AL596327.1-201ENST00000603629 213 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC013476.2-201ENST00000614456 459 ntBASIC3.92□□□□□ -1.78
BDNFP23560 AC103858.2-201ENST00000621471 543 ntBASIC3.92□□□□□ -1.78
BDNFP23560 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
BDNFP23560 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
BDNFP23560 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.92□□□□□ -1.78
BDNFP23560 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
BDNFP23560 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.91□□□□□ -1.78
BDNFP23560 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 RNU6-462P-201ENST00000362659 105 ntBASIC3.91□□□□□ -1.78
BDNFP23560 CD24P4-201ENST00000382840 243 ntBASIC3.91□□□□□ -1.78
BDNFP23560 MIR514A1-201ENST00000385133 98 ntBASIC3.91□□□□□ -1.78
BDNFP23560 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 MIR320C1-201ENST00000408566 88 ntBASIC3.91□□□□□ -1.78
BDNFP23560 MTCO2P8-201ENST00000412213 658 ntBASIC3.91□□□□□ -1.78
BDNFP23560 SPA17P1-201ENST00000416656 452 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.91□□□□□ -1.78
BDNFP23560 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.91□□□□□ -1.78
BDNFP23560 OR4K11P-201ENST00000431829 904 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.91□□□□□ -1.78
BDNFP23560 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
BDNFP23560 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 AC069499.1-201ENST00000489433 509 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC034222.1-201ENST00000494052 532 ntBASIC3.91□□□□□ -1.78
BDNFP23560 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.91□□□□□ -1.78
BDNFP23560 RNU6-1282P-201ENST00000516735 96 ntBASIC3.91□□□□□ -1.78
BDNFP23560 SNORA31.22-201ENST00000517204 135 ntBASIC3.91□□□□□ -1.78
BDNFP23560 RNA5SP291-201ENST00000517222 105 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.91□□□□□ -1.78
BDNFP23560 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 AP000867.2-201ENST00000532468 320 ntBASIC3.91□□□□□ -1.78
BDNFP23560 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 HIGD1AP1-201ENST00000550979 275 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AL845331.3-202ENST00000562856 261 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.91□□□□□ -1.78
BDNFP23560 MTCO2P2-201ENST00000591258 225 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC006116.10-201ENST00000591836 581 ntBASIC3.91□□□□□ -1.78
BDNFP23560 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 AC079228.1-201ENST00000624774 1049 ntBASIC3.91□□□□□ -1.78
BDNFP23560 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.91□□□□□ -1.78
BDNFP23560 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
BDNFP23560 BDP1P-201ENST00000582658 1990 ntBASIC3.91□□□□□ -1.78
BDNFP23560 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
BDNFP23560 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
BDNFP23560 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
BDNFP23560 AL161912.2-201ENST00000565707 3007 ntBASIC3.9□□□□□ -1.78
BDNFP23560 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.78
BDNFP23560 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.9□□□□□ -1.78
BDNFP23560 AP003122.5-201ENST00000527668 3766 ntBASIC3.9□□□□□ -1.78
BDNFP23560 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
BDNFP23560 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
BDNFP23560 SNORA71.3-201ENST00000362582 128 ntBASIC3.9□□□□□ -1.79
BDNFP23560 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
BDNFP23560 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
BDNFP23560 RNA5SP252-201ENST00000391131 119 ntBASIC3.9□□□□□ -1.79
BDNFP23560 RNU6-516P-201ENST00000411381 104 ntBASIC3.9□□□□□ -1.79
BDNFP23560 RPL23AP82-202ENST00000427528 469 ntBASIC3.9□□□□□ -1.79
BDNFP23560 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.9□□□□□ -1.79
BDNFP23560 MTND3P1-201ENST00000441336 220 ntBASIC3.9□□□□□ -1.79
BDNFP23560 RPS3AP46-201ENST00000448352 682 ntBASIC3.9□□□□□ -1.79
BDNFP23560 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.9□□□□□ -1.79
BDNFP23560 RPL30P9-201ENST00000465586 330 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms