Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC127391.1-201ENST00000411737 98 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 BTF3L4P3-201ENST00000418879 476 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 AL445669.1-201ENST00000426743 755 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 RPL23AP83-201ENST00000434984 473 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC004938.1-201ENST00000438468 308 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL590399.6-201ENST00000446396 307 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 MTND4P19-201ENST00000446659 478 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 HMGN1P10-201ENST00000474557 553 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 RN7SL691P-201ENST00000494487 301 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC008958.1-201ENST00000511047 682 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC010486.1-201ENST00000511793 424 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 Vault.3-201ENST00000516676 95 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 HMGB1P19-201ENST00000517578 577 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 SUB1P2-201ENST00000556401 297 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.98□□□□□ -1.61
COL6A1P12109 MIR3944-201ENST00000581277 108 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC068790.5-201ENST00000602741 355 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL136363.1-201ENST00000605349 337 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 HSPE1P14-201ENST00000605812 302 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC078899.5-201ENST00000612475 178 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL442067.2-201ENST00000614033 363 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL133173.2-201ENST00000614270 90 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 MTCO1P24-201ENST00000515438 1558 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A1P12109 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A1P12109 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL6A1P12109 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 AL158163.1-201ENST00000603915 1649 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
COL6A1P12109 AL359922.3-201ENST00000624779 1670 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 RPL23AP57-201ENST00000332361 466 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL6A1P12109 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL6A1P12109 RNA5SP372-201ENST00000390836 115 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC104651.2-201ENST00000447549 528 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AL136380.1-201ENST00000447970 162 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A1P12109 PRSS3P4-201ENST00000453323 162 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 RPS20P20-201ENST00000460498 340 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC005726.1-201ENST00000494679 427 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A1P12109 FGF7P4-201ENST00000509595 295 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 Vault.1-201ENST00000516474 102 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A1P12109 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A1P12109 AC053481.4-201ENST00000583164 216 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC005498.1-201ENST00000592125 465 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC008739.3-201ENST00000603262 127 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 MIR6875-201ENST00000617506 72 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL6A1P12109 MIR6891-201ENST00000618788 93 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A1P12109 AC140479.6-201ENST00000633535 357 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A1P12109 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A1P12109 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A1P12109 CCT4P2-201ENST00000233836 1548 ntBASIC4.97□□□□□ -1.61
COL6A1P12109 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.61
COL6A1P12109 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
COL6A1P12109 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A1P12109 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A1P12109 AC024560.2-201ENST00000507981 1497 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A1P12109 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A1P12109 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
COL6A1P12109 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AL080315.1-201ENST00000406055 466 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 CRYBB2P1-203ENST00000415709 538 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 EIF1P3-201ENST00000423841 334 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 EIF4HP2-201ENST00000424380 563 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms