Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC018816.2-201ENST00000621460 353 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC073348.1-201ENST00000623002 331 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC040168.1-201ENST00000623594 991 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 OR1S1-201ENST00000624470 978 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 SNORA50A-202ENST00000629536 136 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 MKKS-204ENST00000639674 192 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 LINC02211-204ENST00000642024 1070 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 AC093831.2-201ENST00000624393 3427 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 ZNF826P-207ENST00000622273 1910 ntBASIC3.46□□□□□ -1.86
VPS54Q9P1Q0 ZNF542P-204ENST00000482727 1305 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 SNORA71.1-201ENST00000364523 117 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 Y_RNA.408-201ENST00000383987 102 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AL024474.1-201ENST00000404655 591 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 RAD23BP2-201ENST00000416003 1207 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AIMP1P1-201ENST00000418670 937 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 VN1R10P-201ENST00000447106 875 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 RPS20P24-201ENST00000457473 361 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC092757.1-201ENST00000467293 467 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 RPL23AP44-201ENST00000482216 473 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 SNORA70.24-201ENST00000517233 118 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 BNIP3P11-201ENST00000603878 563 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC144521.1-201ENST00000607148 956 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AL590282.1-201ENST00000610379 1136 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC024257.5-201ENST00000612739 531 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 AC005332.6-201ENST00000613178 446 ntBASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS54Q9P1Q0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 MTND4P34-201ENST00000572715 1371 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 RNU5D-1-201ENST00000363299 116 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 RNA5SP274-201ENST00000410484 108 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 MRPS36P1-201ENST00000421291 307 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 OR2AS1P-201ENST00000427827 319 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 RPS24P6-201ENST00000452670 400 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 HMGN2P16-201ENST00000456802 261 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC017015.1-201ENST00000477387 286 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC012181.1-201ENST00000479895 423 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC108734.3-201ENST00000481241 1165 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 UBE2V1P12-201ENST00000503954 474 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC010460.2-201ENST00000509054 677 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 RN7SKP31-201ENST00000516354 278 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 IGHV3-76-201ENST00000522465 295 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC008127.2-201ENST00000549925 1075 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AL163153.1-201ENST00000554223 283 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC012182.1-201ENST00000570133 895 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC069545.1-201ENST00000605671 358 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC231759.1-201ENST00000616455 597 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC018755.4-201ENST00000619715 454 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC006963.1-201ENST00000624003 1052 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 AC109315.1-201ENST00000584143 1347 ntBASIC3.44□□□□□ -1.86
VPS54Q9P1Q0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AL353743.1-202ENST00000431724 1695 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms