Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL390237.1-201ENST00000404226 1415 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 RPL7P26-201ENST00000333817 754 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 SNORD56.3-201ENST00000363507 71 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 MIR3074-201ENST00000384885 81 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL356967.1-201ENST00000406305 431 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 BX842559.1-201ENST00000419615 532 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 ZYG11AP1-201ENST00000430329 837 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 MTND1P30-201ENST00000441241 901 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 EEF1E1P1-201ENST00000446998 430 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 HMGB3P21-201ENST00000452483 547 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 KATNBL1P6-201ENST00000453433 915 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 MTCO2P18-201ENST00000457151 658 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC114981.1-201ENST00000503897 678 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC016065.2-201ENST00000514530 444 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC024909.2-201ENST00000553035 286 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 LARP7P2-201ENST00000575306 125 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC146944.4-201ENST00000602697 718 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC092354.1-201ENST00000606057 376 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 RNU6-88P-201ENST00000606801 100 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL391261.4-201ENST00000616012 481 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AL356266.1-201ENST00000623311 483 ntBASIC3.54□□□□□ -1.84
SIX2Q9NPC8 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SIX2Q9NPC8 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RNU6-462P-201ENST00000362659 105 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RNU4-21P-201ENST00000362802 126 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 ARF4P3-201ENST00000397387 509 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 EIF5P1-201ENST00000400019 1231 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 HMGB1P17-201ENST00000403495 628 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RPL21P133-201ENST00000443666 476 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC104073.1-201ENST00000451988 151 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC026410.2-201ENST00000460281 156 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RPL30P9-201ENST00000465586 330 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC026412.2-201ENST00000512270 1075 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 Y_RNA.655-201ENST00000515919 96 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RNA5SP216-201ENST00000516111 123 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC104986.1-201ENST00000517978 436 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 RPL12P22-201ENST00000519073 490 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 HSPE1P3-201ENST00000559254 309 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 BNIP3P11-201ENST00000603878 563 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC064872.1-201ENST00000604823 1072 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 SNORA51-201ENST00000606420 132 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AL356596.1-201ENST00000624230 379 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.53□□□□□ -1.84
SIX2Q9NPC8 U6.101-201ENST00000637707 76 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC006927.3-201ENST00000638789 384 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AC130650.2-201ENST00000618736 2403 ntBASIC3.53□□□□□ -1.84
SIX2Q9NPC8 AP002907.1-201ENST00000606361 1430 ntBASIC3.53□□□□□ -1.85
SIX2Q9NPC8 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL122126.1-201ENST00000546905 1318 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RNU6-723P-201ENST00000383973 107 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL121972.1-201ENST00000402023 252 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 SSXP10-201ENST00000402595 565 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 HMGN1P24-201ENST00000412282 298 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL138785.1-201ENST00000425821 331 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 LARP1BP3-201ENST00000437229 869 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 CST9LP2-201ENST00000437612 320 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms