Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC092354.2-201ENST00000607786 514 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 VIS1.1-201ENST00000610517 203 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 MIR7851-201ENST00000610611 160 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AC008083.4-201ENST00000615076 444 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AL356321.1-201ENST00000621360 228 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AC079248.2-201ENST00000623779 326 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 MIR4496-201ENST00000635896 61 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AC130650.2-201ENST00000618736 2403 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AP000526.1-201ENST00000603308 1388 ntBASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC28BQ9BUN5 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 OR5BR1P-201ENST00000524992 1330 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC092447.7-201ENST00000422212 1621 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 SNORA4.1-201ENST00000364263 144 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 SNORA7.2-201ENST00000364446 145 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 U8.9-201ENST00000365667 134 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RNU6-1200P-201ENST00000384162 107 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 U8.11-201ENST00000384699 133 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 U8.12-201ENST00000384701 133 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC234781.2-201ENST00000426370 994 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 HMGN2P20-201ENST00000437531 273 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 HSPE1P28-201ENST00000443139 211 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 VN1R10P-201ENST00000447106 875 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RPL39P6-201ENST00000448289 150 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 U8.18-201ENST00000459285 133 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 VN1R17P-201ENST00000472048 1090 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RN7SL132P-201ENST00000478131 296 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RN7SL499P-201ENST00000481141 276 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC114981.1-201ENST00000503897 678 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RNY4P37-201ENST00000516225 96 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 RN7SKP277-201ENST00000516895 283 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 SNORA31.26-201ENST00000517250 137 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 OR6C73P-201ENST00000546432 358 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 MIR5685-201ENST00000579080 79 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC008088.1-201ENST00000580993 280 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC090616.2-202ENST00000584248 222 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 uc_338.1-201ENST00000612113 180 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC006338.2-201ENST00000616864 791 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 OR8B1P-202ENST00000641132 1178 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AL645937.1-201ENST00000641739 1652 ntBASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28BQ9BUN5 AC116096.1-201ENST00000566804 2314 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 Y_RNA.169-201ENST00000363745 96 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 RPL23AP29-201ENST00000397284 453 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL024474.1-201ENST00000404655 591 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 RNU6-628P-201ENST00000410675 107 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 USP9YP33-201ENST00000412220 421 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 MTCYBP38-201ENST00000417160 1123 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL593851.1-201ENST00000426171 157 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL035407.1-201ENST00000429211 571 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AC016712.1-201ENST00000431088 378 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 KCTD10P1-201ENST00000434203 625 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 RPL21P112-201ENST00000434403 463 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 USP9YP35-201ENST00000435696 412 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 UBE2D3P1-201ENST00000436669 444 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 TRIM60P18-201ENST00000441518 828 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 AC104073.1-201ENST00000451988 151 ntBASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC28BQ9BUN5 PLGLA-201ENST00000465668 449 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms