Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC138649.5-201ENST00000637456 137 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 CEP170P1-201ENST00000502249 4587 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC116096.1-201ENST00000566804 2314 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 EXOC5P1-201ENST00000510543 1969 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 Y_RNA.234-201ENST00000364409 97 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 SNORD116-9-201ENST00000384000 95 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 SNORD116-3-201ENST00000384287 95 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 SNORD116-7-201ENST00000384404 95 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 RNU6-769P-201ENST00000384407 104 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 SNORD116-5-201ENST00000384462 95 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 MIR554-201ENST00000384874 96 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 PPIAP31-201ENST00000405422 495 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL445189.1-201ENST00000405722 338 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC109780.2-201ENST00000413467 845 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC016907.1-201ENST00000419483 435 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 Z99497.1-201ENST00000421282 135 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 GDI2P2-201ENST00000445131 608 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 TAF9P1-201ENST00000445421 515 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 Z95327.1-201ENST00000446082 482 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 TAF9P2-201ENST00000454958 515 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 RPS20P32-201ENST00000456044 356 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 OR6K1P-201ENST00000456766 971 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 VN1R105P-201ENST00000486595 910 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC068724.1-201ENST00000487100 792 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC006499.5-201ENST00000505037 514 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC105313.1-201ENST00000509121 353 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC021146.1-201ENST00000511202 716 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 RNU1-45P-201ENST00000517191 141 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 SUMO2P20-201ENST00000520803 283 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 HIGD1AP10-201ENST00000527837 282 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL353997.4-201ENST00000586196 166 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC008507.1-201ENST00000587506 734 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC022916.3-201ENST00000592961 742 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 U73023.1-201ENST00000603134 700 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL590229.1-201ENST00000603497 542 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 AL137849.1-201ENST00000604767 169 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC092354.1-201ENST00000606057 376 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 Z69908.1-201ENST00000622603 247 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC244205.2-202ENST00000635781 342 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AC127502.3-201ENST00000636170 1206 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 AP003399.1-201ENST00000637534 361 ntBASIC3.26□□□□□ -1.89
NKX3-1Q99801 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
NKX3-1Q99801 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
NKX3-1Q99801 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 U3.4-201ENST00000363352 213 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 RNU6-501P-201ENST00000364072 100 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 SNORD6-201ENST00000365444 73 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL359837.1-201ENST00000381357 287 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL391417.1-201ENST00000404100 426 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 RN7SKP266-201ENST00000410232 287 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 RN7SKP202-201ENST00000410439 330 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 CYCSP46-201ENST00000423569 204 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 OR8F1P-201ENST00000425243 930 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC129850.1-201ENST00000436203 508 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms