Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RPL23AP74-201ENST00000437246 471 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC091862.1-201ENST00000438016 1100 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC006028.1-201ENST00000438379 402 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 ISCA1P2-201ENST00000438679 421 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 Z82190.1-201ENST00000454534 490 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC108734.3-201ENST00000481241 1165 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 RNU6-1225P-201ENST00000516336 65 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC104986.1-201ENST00000517978 436 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AL163153.1-201ENST00000554223 283 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AP001029.3-201ENST00000588063 596 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AF129408.1-201ENST00000608767 431 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC096577.2-201ENST00000611455 153 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC024257.5-201ENST00000612739 531 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AL136164.4-201ENST00000625013 2135 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 CDR1-202ENST00000625883 1485 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 RNU6-1176P-201ENST00000390955 107 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC245291.1-201ENST00000419501 328 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 HMGB3P6-201ENST00000444896 598 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 OFD1P3Y-201ENST00000453312 783 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 RPS23P3-201ENST00000470993 430 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC096571.1-202ENST00000506634 735 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 SNORA31.8-201ENST00000516327 108 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC091163.3-201ENST00000518269 1144 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC024224.1-201ENST00000538284 609 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 YWHAZP1-201ENST00000556286 722 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 MIR5004-201ENST00000579078 107 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 VN1R83P-201ENST00000595685 445 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 BDH2P1-201ENST00000602288 736 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AL109653.1-201ENST00000603091 248 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 YPEL5P2-201ENST00000605553 359 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 PART1_2.1-201ENST00000612397 250 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 uc_338.25-201ENST00000613756 156 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC138932.5-201ENST00000617759 563 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AL158163.2-201ENST00000619110 700 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 AC099654.8-201ENST00000637757 681 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 MIR1322-201ENST00000638013 71 ntBASIC3.18□□□□□ -1.9
VPS35Q96QK1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
VPS35Q96QK1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS35Q96QK1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 RNU6-1155P-201ENST00000363554 107 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 RPL5P18-201ENST00000406671 891 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC109780.2-201ENST00000413467 845 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC019178.2-201ENST00000423595 505 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 BX890604.2-201ENST00000427883 474 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC006946.1-201ENST00000429106 328 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 HMGN2P20-201ENST00000437531 273 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 KCTD9P5-201ENST00000504141 1170 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC113347.3-201ENST00000509113 148 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 RN7SKP31-201ENST00000516354 278 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms