Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 BCORP1-203ENST00000513194 5093 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AL078621.3-201ENST00000623707 2042 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 OR13C1P-202ENST00000641378 2919 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 SNORD62.1-201ENST00000362541 86 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.145-201ENST00000363527 102 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.594-201ENST00000410373 140 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 ATG3P1-201ENST00000419507 911 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC093155.2-201ENST00000420734 937 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 CYCSP6-201ENST00000434498 302 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC099670.2-201ENST00000435130 321 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 RPS24P6-201ENST00000452670 400 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 NXT1P1-201ENST00000458481 316 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 RNU7-138P-201ENST00000459479 64 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 SNORD125-201ENST00000459538 96 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC083982.1-201ENST00000485679 344 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 GLUD1P3-202ENST00000508551 200 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC021146.3-201ENST00000511911 260 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.661-201ENST00000516003 99 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 SNORD46.2-201ENST00000516021 102 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 RNU6-1256P-201ENST00000516539 103 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC069113.1-201ENST00000517763 267 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC105031.1-201ENST00000518550 476 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC122688.1-201ENST00000541494 223 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AL355810.1-201ENST00000614629 552 ntBASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC025470.1-201ENST00000510053 2032 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RN7SKP185-201ENST00000362813 326 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 SNORD3E-201ENST00000362899 217 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RNA5SP131-201ENST00000365452 119 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RNU6-1040P-201ENST00000383974 107 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RNA5SP284-201ENST00000384547 118 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 MIR301A-201ENST00000385261 86 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 SNORD73A-201ENST00000386062 65 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AL354868.1-201ENST00000417077 482 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC007919.1-201ENST00000429380 217 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RPS29P14-201ENST00000431518 171 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AL160004.2-201ENST00000432935 350 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 LINC02210-201ENST00000444561 288 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 Z80107.2-201ENST00000445127 392 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 HMGN2P21-201ENST00000447764 270 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC007998.1-201ENST00000474156 672 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RN7SKP276-201ENST00000516242 268 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RNU6-1073P-201ENST00000517182 106 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC022634.1-201ENST00000520765 532 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC063950.1-201ENST00000552036 308 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 IGBP1P1-201ENST00000554337 1009 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 OR1M4P-201ENST00000589199 287 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AL161798.1-201ENST00000604630 131 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC018462.2-201ENST00000605375 395 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AP002826.1-201ENST00000608835 315 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC107294.1-201ENST00000609524 467 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 MIR6862-1-201ENST00000613016 70 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 MIR6862-2-201ENST00000614755 70 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms