Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ATG3P1-201ENST00000419507 911 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC006960.1-201ENST00000419980 153 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 MTCO2P23-201ENST00000425216 680 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 RPL23AP74-201ENST00000437246 471 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC093155.1-201ENST00000440164 826 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 EXOSC3P1-201ENST00000448649 500 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 RPS29P12-201ENST00000460178 152 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC034236.1-201ENST00000469891 373 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 SETP11-201ENST00000473027 690 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC108860.1-201ENST00000484521 383 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 CAB39P1-201ENST00000502277 460 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 VN1R104P-201ENST00000505115 1009 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 TXNP6-201ENST00000510190 310 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 RNA5SP217-201ENST00000515959 91 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC010376.1-201ENST00000522101 334 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 DEFB130C-202ENST00000530001 230 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 OR5B10P-201ENST00000532869 642 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC037471.2-201ENST00000564941 598 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC011260.1-201ENST00000578420 472 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AL592148.2-201ENST00000612210 372 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AL157817.1-201ENST00000614264 790 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC099654.9-201ENST00000637055 678 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 AC087821.2-201ENST00000637086 450 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 U6.101-201ENST00000637707 76 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS39Q96JC1 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS39Q96JC1 MTND5P27-201ENST00000428871 1720 ntBASIC3.27□□□□□ -1.89
VPS39Q96JC1 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS39Q96JC1 GABRG2-229ENST00000641017 3628 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 Y_RNA.472-201ENST00000384322 102 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 MTCO1P56-201ENST00000401674 224 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AL079342.2-201ENST00000403367 482 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 BEND7P1-201ENST00000422058 457 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC091286.1-201ENST00000431233 461 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 MTCO1P53-201ENST00000441633 699 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 PDSS1P2-201ENST00000449397 678 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 RPL26P28-201ENST00000451325 435 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 SNORA84-201ENST00000459229 133 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 RPS27P29-201ENST00000463110 252 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS39Q96JC1 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AP002812.1-201ENST00000495378 474 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC021146.5-201ENST00000503544 545 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 MTATP6P9-201ENST00000515039 680 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 RN7SKP157-201ENST00000516174 282 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AP001189.2-201ENST00000527320 189 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 MIR3158-1-201ENST00000583596 81 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC015688.2-201ENST00000584523 262 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC245389.1-201ENST00000605141 529 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 U3.45-201ENST00000607547 219 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AL591516.1-201ENST00000611326 274 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC006133.1-201ENST00000617106 264 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AC123767.1-202ENST00000620407 817 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 AL391262.2-201ENST00000622466 494 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 AL392088.2-201ENST00000637607 285 ntBASIC3.26□□□□□ -1.89
VPS39Q96JC1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 158.7 ms