Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 FP236240.3-201ENST00000623061 327 ntBASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 AC073530.2-201ENST00000623987 261 ntBASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 AC244205.2-202ENST00000635781 342 ntBASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.54□□□□□ -1.84
NUP54Q7Z3B4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 RPL21P132-201ENST00000331267 462 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 RNU6-28P-201ENST00000362378 107 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SNORA1.3-201ENST00000384676 136 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AL354719.1-201ENST00000406535 843 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC245052.5-201ENST00000416320 649 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC011233.1-201ENST00000422812 283 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MTND4P20-201ENST00000424125 869 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 USP9YP36-201ENST00000424581 829 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AL593851.1-201ENST00000426171 157 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MTATP6P4-201ENST00000427725 675 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MTCO3P20-201ENST00000454926 688 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 DNAJC19P1-201ENST00000455312 319 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 RN7SL93P-201ENST00000463035 293 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC023424.2-201ENST00000493479 777 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC004069.2-201ENST00000505438 1114 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MRPS33P3-201ENST00000513456 322 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MTCYBP43-201ENST00000513621 740 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MTND4LP31-201ENST00000514859 294 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SNORA31.1-201ENST00000515993 133 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SNORA31.5-201ENST00000516190 133 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 OR6C7P-201ENST00000547875 934 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC008015.1-201ENST00000555505 465 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MED28P6-201ENST00000558776 231 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC136618.2-201ENST00000575091 400 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC020914.4-201ENST00000597690 277 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC018714.1-201ENST00000605028 208 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AL365503.1-201ENST00000605247 905 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AP002826.1-201ENST00000608835 315 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 AC005344.1-201ENST00000613391 459 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SNORA50A-202ENST00000629536 136 ntBASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NUP54Q7Z3B4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AL513185.3-201ENST00000433335 1300 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 Y_RNA.18-201ENST00000362461 102 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 TMEM167AP1-201ENST00000423409 219 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 UBE2D3P2-201ENST00000424409 445 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 RPL21P40-201ENST00000428586 483 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC002381.1-201ENST00000447049 280 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 RPS4XP10-201ENST00000465034 731 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AP000563.1-201ENST00000490865 758 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 MTND1P22-201ENST00000510572 951 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC024589.1-201ENST00000512207 263 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 RN7SKP209-201ENST00000516888 304 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC106785.1-201ENST00000565935 262 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AC090615.1-201ENST00000577519 154 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 BBIP1P1-201ENST00000602999 279 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AL034351.1-201ENST00000605288 668 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
NUP54Q7Z3B4 AP004289.2-201ENST00000444413 1457 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms