Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 U2.16-201ENST00000613119 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.12-201ENST00000613778 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.20-201ENST00000613956 192 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 MIR7973-1-201ENST00000614683 76 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.9-201ENST00000615427 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.11-201ENST00000616345 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.2-201ENST00000616535 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.3-201ENST00000617785 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.19-201ENST00000618602 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 RNU2-1-201ENST00000618664 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.6-201ENST00000619225 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.5-201ENST00000619465 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.10-201ENST00000620268 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 RNA5SP189-201ENST00000364920 115 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 RNU6-564P-201ENST00000410983 104 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 BUD31P2-201ENST00000449374 300 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 CCNHP1-201ENST00000513311 678 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AL160394.1-201ENST00000624765 724 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 CYP3A51P-201ENST00000633513 256 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC009950.2-201ENST00000636548 183 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 DCAF13P1-201ENST00000495256 1330 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 MTCYBP7-201ENST00000419540 1134 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AL009174.1-201ENST00000426577 416 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC146507.1-201ENST00000468335 354 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC012181.1-201ENST00000479895 423 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 RNA5SP402-201ENST00000517148 110 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 MIR4458-201ENST00000578872 75 ntBASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88AQ3V6T2 AC008432.1-201ENST00000615912 1320 ntBASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 AC007256.1-201ENST00000392253 2765 ntBASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 SNORA11.4-201ENST00000408823 129 ntBASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 AC078814.3-201ENST00000553036 491 ntBASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
CCDC88AQ3V6T2 AC096656.1-201ENST00000623826 1364 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 MIR142-201ENST00000384835 87 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AL450338.1-201ENST00000407987 512 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 MTCO3P11-201ENST00000455103 774 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 TMEM248P1-201ENST00000510579 951 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC128687.1-201ENST00000605304 619 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AL359198.2-201ENST00000611836 194 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC244517.12-201ENST00000623581 663 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AL161431.1-201ENST00000618966 4205 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AL138785.1-201ENST00000425821 331 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 GTF2IP9-201ENST00000502460 301 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 RNU4-18P-201ENST00000516751 149 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 RNU4-60P-201ENST00000517239 135 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AC091834.1-201ENST00000614543 472 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 RMST_5.1-201ENST00000618704 126 ntBASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88AQ3V6T2 RNU1-51P-201ENST00000365345 176 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 OR5H15-201ENST00000383696 930 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 SNORA67.3-201ENST00000384366 140 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 ZNF355P-201ENST00000427301 3216 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 RPS15AP28-201ENST00000435088 386 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 AL138799.3-201ENST00000438968 350 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 RPL39P40-201ENST00000445481 146 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 TPMTP4-201ENST00000450749 678 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 RNA5SP200-201ENST00000516360 103 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 AC009570.1-201ENST00000609599 745 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 AC117490.2-201ENST00000610042 594 ntBASIC2.66□□□□□ -1.98
CCDC88AQ3V6T2 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms