Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC107954.1-201ENST00000565906 727 ntBASIC5□□□□□ -1.61
COL6A1P12109 RPS3AP23-202ENST00000574601 686 ntBASIC5□□□□□ -1.61
COL6A1P12109 MIR4472-2-201ENST00000582069 67 ntBASIC5□□□□□ -1.61
COL6A1P12109 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5□□□□□ -1.61
COL6A1P12109 AC011712.1-201ENST00000588959 234 ntBASIC5□□□□□ -1.61
COL6A1P12109 MIR1302-2-201ENST00000607096 138 ntBASIC5□□□□□ -1.61
COL6A1P12109 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5□□□□□ -1.61
COL6A1P12109 AC006504.8-201ENST00000621046 635 ntBASIC5□□□□□ -1.61
COL6A1P12109 AC039056.2-201ENST00000622261 511 ntBASIC5□□□□□ -1.61
COL6A1P12109 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5□□□□□ -1.61
COL6A1P12109 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 DHX9P1-201ENST00000436565 3076 ntBASIC5□□□□□ -1.61
COL6A1P12109 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5□□□□□ -1.61
COL6A1P12109 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5□□□□□ -1.61
COL6A1P12109 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC010300.1-201ENST00000600671 5134 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A1P12109 AL136164.3-201ENST00000624429 3978 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A1P12109 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 MIR331-201ENST00000362302 94 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 SNORD46.1-201ENST00000364139 104 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 Y_RNA.333-201ENST00000365274 102 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 MTND3P17-201ENST00000416968 344 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 RGS17P1-201ENST00000423358 553 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 RPS6P12-201ENST00000432491 726 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC007389.2-201ENST00000434630 306 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 RSU1P2-202ENST00000437884 485 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 RPL7P54-201ENST00000438336 674 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 SEPT14P3-201ENST00000439401 183 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 SDCBPP1-201ENST00000440192 890 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MRPL48P1-201ENST00000445390 636 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AL732372.2-207ENST00000445840 183 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.99□□□□□ -1.61
COL6A1P12109 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 SEPT14P2-201ENST00000453405 183 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 SNRPGP5-201ENST00000456003 220 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 RPL23AP2-201ENST00000471227 466 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AP000893.1-201ENST00000474462 794 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 RPL36AP51-201ENST00000487216 318 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 RPS27AP13-201ENST00000498403 237 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC114967.1-201ENST00000504890 259 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MTCO3P9-201ENST00000506989 781 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC117522.3-201ENST00000507974 584 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A1P12109 SEPT14P4-201ENST00000513445 186 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 FO082796.1-201ENST00000523795 183 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 HSPE1P3-201ENST00000559254 309 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 RN7SL703P-201ENST00000578485 302 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MIR4795-201ENST00000584182 89 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MIR3936-201ENST00000584304 110 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC011468.4-201ENST00000603942 409 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC013553.2-201ENST00000604244 589 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 AC020634.1-201ENST00000608701 549 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.99□□□□□ -1.61
COL6A1P12109 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 AL672167.1-205ENST00000641112 3080 ntBASIC4.99□□□□□ -1.61
COL6A1P12109 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.99□□□□□ -1.61
COL6A1P12109 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.99□□□□□ -1.61
COL6A1P12109 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A1P12109 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL6A1P12109 MAPK10-286ENST00000641208 8747 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL133412.1-201ENST00000380194 2992 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.98□□□□□ -1.61
COL6A1P12109 AC106871.1-201ENST00000568324 3102 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 CPHL1P-201ENST00000461341 3407 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.98□□□□□ -1.61
COL6A1P12109 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A1P12109 RNY3P3-201ENST00000363816 102 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 RNA5SP513-201ENST00000364648 118 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A1P12109 RNU6-767P-201ENST00000384132 107 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A1P12109 RPS20P2-201ENST00000402520 389 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 RNU6-908P-201ENST00000410160 94 ntBASIC4.98□□□□□ -1.61
COL6A1P12109 AL359704.1-201ENST00000411586 781 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms