Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIR1287-201ENST00000408492 90 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AP1B1P2-201ENST00000416196 106 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC005517.2-201ENST00000424673 553 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 RPL7P5-201ENST00000471472 736 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 RPS3AP23-202ENST00000574601 686 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC103810.1-201ENST00000579873 453 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC88BA6NC98 RPP40P2-201ENST00000603596 712 ntBASIC3.22□□□□□ -1.89
CCDC88BA6NC98 MTCO1P14-201ENST00000441695 1559 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC88BA6NC98 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CCDC88BA6NC98 Y_RNA.796-201ENST00000364268 102 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 Y_RNA.799-201ENST00000364992 102 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 FNDC3CP-201ENST00000420795 1155 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 HIGD1AP11-201ENST00000438361 280 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC88BA6NC98 AL157827.1-201ENST00000447622 132 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 AC087190.1-201ENST00000484462 480 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC88BA6NC98 MTND5P4-201ENST00000514978 288 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 AC104986.1-201ENST00000517978 436 ntBASIC3.21□□□□□ -1.9
CCDC88BA6NC98 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AL353729.1-201ENST00000425044 720 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 RPL23AP76-201ENST00000441860 458 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC009961.3-201ENST00000449832 765 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AL021397.1-201ENST00000451806 248 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC88BA6NC98 GTF2IP9-201ENST00000502460 301 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 NAMPTP2-201ENST00000505629 1115 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC067805.1-201ENST00000559344 470 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC88BA6NC98 MIR8081-201ENST00000611533 95 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 C2orf27A-204ENST00000623058 969 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AC103988.1-201ENST00000566382 2177 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 AL592437.2-201ENST00000421655 2434 ntBASIC3.2□□□□□ -1.9
CCDC88BA6NC98 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88BA6NC98 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
CCDC88BA6NC98 AL353597.2-202ENST00000434901 373 ntBASIC3.19□□□□□ -1.9
CCDC88BA6NC98 AC107393.1-201ENST00000512403 346 ntBASIC3.19□□□□□ -1.9
CCDC88BA6NC98 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88BA6NC98 CD24P2-201ENST00000565486 219 ntBASIC3.19□□□□□ -1.9
CCDC88BA6NC98 MIR8070-201ENST00000616510 88 ntBASIC3.19□□□□□ -1.9
CCDC88BA6NC98 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88BA6NC98 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC88BA6NC98 AF127577.6-201ENST00000623352 2191 ntBASIC3.19□□□□□ -1.9
CCDC88BA6NC98 FABP5P6-201ENST00000510588 409 ntBASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AC091488.1-201ENST00000604239 660 ntBASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AC012531.5-201ENST00000611375 151 ntBASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AC000123.2-201ENST00000623124 461 ntBASIC3.18□□□□□ -1.9
CCDC88BA6NC98 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC88BA6NC98 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CCDC88BA6NC98 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
CCDC88BA6NC98 AC048351.1-201ENST00000420064 602 ntBASIC3.17□□□□□ -1.9
CCDC88BA6NC98 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88BA6NC98 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88BA6NC98 RNU6-717P-201ENST00000459076 104 ntBASIC3.17□□□□□ -1.9
CCDC88BA6NC98 AC025033.1-201ENST00000463883 194 ntBASIC3.17□□□□□ -1.9
CCDC88BA6NC98 SNORA25.15-201ENST00000516487 89 ntBASIC3.17□□□□□ -1.9
CCDC88BA6NC98 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 EIF1AXP1-201ENST00000419267 435 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 SETP8-201ENST00000435341 628 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC109486.1-201ENST00000486833 374 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.6-201ENST00000603753 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.11-201ENST00000604059 253 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.10-201ENST00000604330 253 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC008162.1-201ENST00000604718 254 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.1-201ENST00000604752 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.2-201ENST00000604983 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.5-201ENST00000605253 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.4-201ENST00000605279 254 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.12-201ENST00000605291 253 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.8-201ENST00000605353 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.9-201ENST00000605428 253 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL670379.7-201ENST00000605823 252 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC005336.3-201ENST00000623833 2679 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 SNORA51.11-201ENST00000384442 131 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 RPL23AP20-201ENST00000447965 421 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC010265.1-201ENST00000513509 211 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 OR4K7P-201ENST00000580232 945 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 AL359821.1-201ENST00000605519 182 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88BA6NC98 XIST_intron.1-201ENST00000619444 68 ntBASIC3.16□□□□□ -1.9
CCDC88BA6NC98 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
CCDC88BA6NC98 RPL23AP39-201ENST00000415533 405 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms