Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC092155.2-201ENST00000454675 477 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 ELOCP12-201ENST00000458706 328 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 RPS4XP13-201ENST00000483219 789 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 POU5F1P7-201ENST00000508759 541 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC010460.2-201ENST00000509054 677 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC091826.1-201ENST00000514065 313 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC092470.1-201ENST00000546187 132 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC093519.1-201ENST00000566109 298 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 MIR4506-201ENST00000584693 77 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC015871.2-201ENST00000603605 948 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AL033523.1-201ENST00000605153 153 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC105429.2-201ENST00000610567 517 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC024257.5-201ENST00000612739 531 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC107075.1-201ENST00000613695 314 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC023158.2-201ENST00000614876 543 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC007998.5-201ENST00000622938 237 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 SNORA50A-202ENST00000629536 136 ntBASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
TRAV40A0A0B4J280 AC093831.2-201ENST00000624393 3427 ntBASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 AC005183.1-201ENST00000603687 1979 ntBASIC2.4□□□□□ -2.02
TRAV40A0A0B4J280 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-989P-201ENST00000362756 107 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-1066P-201ENST00000363573 105 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 SNORA51.4-201ENST00000364993 124 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 Y_RNA.510-201ENST00000384511 114 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 ERHP2-201ENST00000402323 299 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AL136310.1-201ENST00000404926 654 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNA5SP80-201ENST00000410475 111 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AL592310.1-201ENST00000414330 671 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 BMS1P22-201ENST00000414726 313 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 Z80107.1-201ENST00000436830 412 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 EEF1A1P39-201ENST00000440791 250 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RPS24P13-201ENST00000442520 397 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC011979.1-201ENST00000472300 483 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 UBE2DNL-203ENST00000474922 222 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC069528.1-202ENST00000482888 637 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RPL21P131-201ENST00000497298 483 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNA5SP385-201ENST00000515947 110 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNY4P37-201ENST00000516225 96 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC087808.1-201ENST00000520501 361 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 OR5G4P-201ENST00000525251 760 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 HIGD1AP10-201ENST00000527837 282 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 OR8L1P-201ENST00000534005 955 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AADACP1-206ENST00000561502 1193 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC090116.1-201ENST00000615679 446 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC121761.2-201ENST00000617300 689 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC007318.2-201ENST00000620999 243 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AC006963.1-201ENST00000624003 1052 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 MTND5P19-201ENST00000424872 1794 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 AL672296.1-201ENST00000427780 2158 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms