Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC007685.1-201ENST00000329806 452 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 Y_RNA.75-201ENST00000362927 97 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 SNORD35A-201ENST00000363389 86 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-1293P-201ENST00000384077 107 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 SNORA20-201ENST00000384662 132 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-239P-201ENST00000390990 99 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 MIR513C-201ENST00000401352 84 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 DUTP5-201ENST00000406790 469 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RNA5SP115-201ENST00000411160 107 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RPS15AP40-201ENST00000419621 391 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 HMGB3P3-201ENST00000510526 400 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC092470.1-201ENST00000546187 132 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 MIR6889-201ENST00000613185 59 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 MIR6129-201ENST00000616087 109 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-156P-201ENST00000621869 107 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 DLD-214ENST00000639772 421 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC116667.2-201ENST00000641075 823 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 CASC19-246ENST00000641625 1606 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 BTBD10P1-201ENST00000549824 1352 ntBASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS9D1Q9Y2B5 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC092692.1-201ENST00000623625 2595 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-989P-201ENST00000362756 107 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-1243P-201ENST00000364028 107 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 Y_RNA.238-201ENST00000364441 102 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-147P-201ENST00000383983 107 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 SNORA40.19-201ENST00000390846 128 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-817P-201ENST00000391083 104 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNA5SP89-201ENST00000410300 108 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AL353621.1-201ENST00000418219 243 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 EBAG9P1-201ENST00000418955 543 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AKR1B10P1-201ENST00000425765 942 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RPL7L1P9-201ENST00000431298 745 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC092967.1-201ENST00000449016 481 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AL133445.1-201ENST00000467051 452 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC005912.1-201ENST00000495392 255 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-659P-201ENST00000516454 104 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 MIR548AC-201ENST00000585049 88 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 AC129915.3-201ENST00000634128 948 ntBASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.3□□□□□ -1.4
VPS9D1Q9Y2B5 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 Y_RNA.136-201ENST00000363444 102 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 RNU6-476P-201ENST00000384726 107 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 MIR433-201ENST00000384837 93 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 U3.29-201ENST00000391296 212 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AL022722.2-201ENST00000402519 180 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AL390729.2-201ENST00000416137 156 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 RPL21P50-201ENST00000417698 477 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 Y_RNA.694-201ENST00000516677 117 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 CYCSP25-201ENST00000525280 316 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 MIR4732-201ENST00000581873 76 ntBASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS9D1Q9Y2B5 AC008749.1-201ENST00000597650 306 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms