Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.63□□□□□ -1.67
DDX56Q9NY93 MIR4436B2-201ENST00000581415 91 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 MIR4436B1-201ENST00000583272 91 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC068790.2-201ENST00000602601 557 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC245014.2-201ENST00000603689 287 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC246785.4-201ENST00000605374 287 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AL161734.1-201ENST00000609720 557 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC023043.4-201ENST00000612081 449 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AL589743.7-201ENST00000612637 233 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC008498.1-201ENST00000613012 531 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.63□□□□□ -1.67
DDX56Q9NY93 AL133173.2-201ENST00000614270 90 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 SDR42E1P2-201ENST00000614861 481 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 SNX18P1Y-201ENST00000616231 511 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AC006338.1-201ENST00000618453 749 ntBASIC4.63□□□□□ -1.67
DDX56Q9NY93 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.63□□□□□ -1.67
DDX56Q9NY93 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.63□□□□□ -1.67
DDX56Q9NY93 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
DDX56Q9NY93 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
DDX56Q9NY93 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
DDX56Q9NY93 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 U3.11-201ENST00000364476 212 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 SNORA36C-201ENST00000384289 132 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 MIR3074-201ENST00000384885 81 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 MIR659-201ENST00000384963 97 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 RPL7P60-201ENST00000397636 735 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 RNU2-16P-201ENST00000410712 136 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 ELOCP4-201ENST00000420090 333 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 RPL12P3-201ENST00000440080 396 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 FGF7P3-201ENST00000454645 303 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 RPL12P20-201ENST00000475538 479 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 ARL2BPP6-201ENST00000512757 439 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC114797.1-201ENST00000514003 728 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 RNU6-405P-201ENST00000516637 110 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AP001781.1-201ENST00000530977 207 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC128657.1-201ENST00000549459 145 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AL606834.2-201ENST00000602954 668 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC073648.5-201ENST00000603502 305 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC010133.1-201ENST00000615809 842 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AL359715.5-201ENST00000623431 443 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 AL136313.1-201ENST00000624804 202 ntBASIC4.62□□□□□ -1.67
DDX56Q9NY93 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
DDX56Q9NY93 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
DDX56Q9NY93 AC068254.2-201ENST00000623938 3577 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
DDX56Q9NY93 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
DDX56Q9NY93 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
DDX56Q9NY93 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 SNORD113.2-201ENST00000364166 89 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 RPS20P14-201ENST00000412545 360 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 EIF4EP1-201ENST00000422311 642 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
DDX56Q9NY93 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 ISCA1P6-201ENST00000427740 390 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 TXNP1-201ENST00000441872 371 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 SNORD97-201ENST00000459187 142 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AC106872.2-201ENST00000494303 480 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 PPBPP1-201ENST00000510807 373 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 IGLV3-26-201ENST00000520756 302 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AP003392.2-201ENST00000527269 208 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 PHBP17-201ENST00000528576 541 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 OR5D15P-201ENST00000531671 942 ntBASIC4.61□□□□□ -1.67
DDX56Q9NY93 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC4.61□□□□□ -1.67
DDX56Q9NY93 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 212.2 ms