Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RPL31P20-201ENST00000449593 360 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 MTCO3P35-201ENST00000485582 781 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RPL9P6-201ENST00000492764 598 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC111193.1-201ENST00000504097 155 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AP003717.3-201ENST00000544832 1180 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 EIF5A2P1-201ENST00000564027 460 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 MIR3945-201ENST00000581853 98 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 MIR5007-201ENST00000583098 95 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC104984.5-201ENST00000586878 94 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RPL23AP78-201ENST00000599928 470 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 U6.48-201ENST00000618523 106 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AL355578.1-201ENST00000607405 1328 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AL512283.1-201ENST00000606756 1384 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AL139156.1-201ENST00000412785 841 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 RPL21P112-201ENST00000434403 463 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AL035407.2-201ENST00000454090 378 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 ARPC3P2-201ENST00000457786 533 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 snoU13.7-201ENST00000459220 104 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 TTC39CP1-201ENST00000512513 755 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AC067904.2-201ENST00000517322 1283 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AC115085.1-201ENST00000588924 229 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 AP002907.1-201ENST00000606361 1430 ntBASIC2.09□□□□□ -2.07
SCN3AQ9NY46 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
SCN3AQ9NY46 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
SCN3AQ9NY46 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.09□□□□□ -2.08
SCN3AQ9NY46 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.09□□□□□ -2.08
SCN3AQ9NY46 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC104454.1-201ENST00000421341 1401 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 RNU1-138P-201ENST00000384093 164 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 RPL23AP47-201ENST00000408017 460 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 RNU4-26P-201ENST00000410270 107 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC107081.1-201ENST00000414975 361 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 EI24P1-201ENST00000416584 867 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 TRAPPC13P1-201ENST00000435991 1062 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 HMGB1P15-201ENST00000453854 435 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AP003467.2-201ENST00000520175 319 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC239860.2-201ENST00000525886 270 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AL160237.3-201ENST00000604114 1013 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 CYCSP45-201ENST00000402289 315 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 RSL24D1P2-201ENST00000445584 366 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 Y_RNA.638-201ENST00000459374 113 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 snoU13.15-201ENST00000459407 104 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC090515.1-201ENST00000465295 476 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC133963.2-201ENST00000513686 578 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC104115.2-201ENST00000523026 687 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AP001521.1-201ENST00000609150 300 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AL356266.1-201ENST00000623311 483 ntBASIC2.08□□□□□ -2.08
SCN3AQ9NY46 AC073055.1-201ENST00000456901 1621 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 RNU6-666P-201ENST00000363499 107 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 RNU6-31P-201ENST00000384388 108 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 RNU2-21P-201ENST00000410368 188 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 AL137014.1-201ENST00000420490 1226 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 Z98742.2-201ENST00000431564 187 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 RPS7P2-201ENST00000435134 607 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.07□□□□□ -2.08
SCN3AQ9NY46 AC104090.1-201ENST00000506341 1171 ntBASIC2.07□□□□□ -2.08
SCN3AQ9NY46 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms