Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNU1-14P-201ENST00000362759 152 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNA5SP307-201ENST00000362863 116 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNY4P14-201ENST00000363656 96 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNU1-64P-201ENST00000365443 163 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNA5SP151-201ENST00000365632 117 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 SNORA20.2-201ENST00000383922 131 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 MIR153-1-201ENST00000384914 90 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC097374.1-203ENST00000400783 485 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNA5SP36-201ENST00000410197 133 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RPS15AP12-201ENST00000419498 388 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC007283.2-201ENST00000424739 197 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AL590399.6-201ENST00000446396 307 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 WASF1P1-201ENST00000447560 1131 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RPL29P29-201ENST00000448725 423 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 MTND2P24-201ENST00000453434 806 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 snoU109.4-201ENST00000458953 143 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RPL31P58-201ENST00000469001 379 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RPS27AP13-201ENST00000498403 237 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 PRDX4P1-201ENST00000507189 574 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC105914.1-201ENST00000511798 226 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RNA5SP519-201ENST00000516480 119 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 RN7SKP116-201ENST00000516902 319 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC106785.1-201ENST00000565935 262 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 MIR4458-201ENST00000578872 75 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC068790.5-201ENST00000602741 355 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AP002360.3-201ENST00000607673 710 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC104458.1-201ENST00000608243 463 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 FAM27D1-201ENST00000612308 341 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 U6.42-201ENST00000618440 107 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 AC112484.5-201ENST00000624189 228 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 MTCO1P24-201ENST00000515438 1558 ntBASIC4.48□□□□□ -1.69
TDP1Q9NUW8 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.48□□□□□ -1.69
TDP1Q9NUW8 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AL672167.1-203ENST00000641299 2975 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC027290.2-201ENST00000623210 18662 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 Y_RNA.88-201ENST00000363029 99 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RNU6-263P-201ENST00000363811 107 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RNU6-1090P-201ENST00000364065 94 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 Y_RNA.402-201ENST00000383972 102 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 Y_RNA.453-201ENST00000384223 109 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AL359643.1-201ENST00000404109 423 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RN7SKP27-201ENST00000410684 333 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 SNORA74C-2-201ENST00000411179 201 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 USP9YP6-201ENST00000413550 854 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 EIF1P3-201ENST00000423841 334 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ELOCP14-201ENST00000428070 331 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ELOCP18-201ENST00000434209 337 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ELOCP7-201ENST00000439968 331 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RPL23AP33-201ENST00000442301 452 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC007537.2-201ENST00000472093 511 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC020893.1-201ENST00000502452 580 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RNA5SP73-201ENST00000516744 108 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC134698.5-201ENST00000519444 336 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC022616.3-201ENST00000523940 148 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RN7SL600P-201ENST00000581811 299 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 OR6R2P-201ENST00000609216 300 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms