Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNORA44-201ENST00000384584 132 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 MIR493-201ENST00000385254 89 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 BX664727.1-201ENST00000416024 466 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 FO393414.1-201ENST00000428697 1184 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC005345.1-201ENST00000431868 217 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 UBE2DNL-203ENST00000474922 222 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC097462.2-201ENST00000504623 481 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 RPL23AP94-201ENST00000512518 302 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 RNA5SP135-201ENST00000517019 125 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AP002404.1-201ENST00000532005 451 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 DUXAP4-201ENST00000603046 613 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AP002906.1-201ENST00000603405 233 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AP002826.1-201ENST00000608835 315 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 ATP5A1P2-202ENST00000616464 443 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 SNORD39.4-201ENST00000620099 78 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC007275.1-201ENST00000621243 671 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AP000676.4-201ENST00000624659 623 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 MFSD8-245ENST00000641743 948 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 OR5BR1P-201ENST00000524992 1330 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC004972.1-201ENST00000623934 2209 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 MIR1289-1-201ENST00000408836 144 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 NDUFB4P5-201ENST00000415445 361 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC012065.2-201ENST00000421295 375 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 RPL27AP8-201ENST00000424277 446 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AL121871.1-201ENST00000443413 436 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 GXYLT1P1-201ENST00000446657 490 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AL050341.1-201ENST00000447743 313 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 RN7SL283P-201ENST00000489055 303 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC093278.1-201ENST00000494700 600 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC010625.1-201ENST00000511296 403 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC245166.1-201ENST00000521012 253 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 FAM60DP-201ENST00000524174 632 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 OR4R2P-201ENST00000530815 597 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 SULT1C2P1-202ENST00000562418 459 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC055876.1-202ENST00000567053 138 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 MTCO1P40-201ENST00000574371 625 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 MIR2682-201ENST00000580305 110 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC006504.3-201ENST00000586818 523 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC093732.2-201ENST00000607950 274 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 uc_338.1-201ENST00000612113 180 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC091925.2-201ENST00000625059 256 ntBASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.19□□□□□ -1.9
TM9SF3Q9HD45 AC091564.4-201ENST00000533934 2194 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 RNU6-251P-201ENST00000363235 104 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 OR1L1-202ENST00000373686 1083 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AL136372.1-201ENST00000403060 228 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AL355615.1-201ENST00000406187 641 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 RPL35AP12-201ENST00000425362 338 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 SAR1AP4-201ENST00000429225 591 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 EZH2P1-201ENST00000431167 291 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC241584.1-201ENST00000438469 1241 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 HMGB3P11-201ENST00000440127 604 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC025750.2-201ENST00000442609 450 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 MTCO2P9-201ENST00000503214 694 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC084024.2-201ENST00000503480 791 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC121161.1-201ENST00000510606 652 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 AC008885.1-201ENST00000514930 301 ntBASIC3.18□□□□□ -1.9
TM9SF3Q9HD45 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms