Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC3Q9BQI4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 NCAPGP1-201ENST00000505112 1814 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC027287.1-201ENST00000553115 1453 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 SNORD6-201ENST00000365444 73 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 RNA5SP167-201ENST00000365461 116 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL590084.2-201ENST00000401481 382 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 DHFRP6-201ENST00000401776 268 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL121972.1-201ENST00000402023 252 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 CYCSP45-201ENST00000402289 315 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC009237.5-201ENST00000414271 501 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 PTP4A1P5-201ENST00000420305 455 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC244098.2-201ENST00000422068 99 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL365203.2-201ENST00000423444 196 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AF228730.2-201ENST00000438784 848 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL138799.3-201ENST00000438968 350 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 MTCO3P20-201ENST00000454926 688 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC008155.2-201ENST00000464337 397 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 RPL31P50-201ENST00000471002 296 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC119751.5-201ENST00000514077 770 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC022861.1-201ENST00000522981 663 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 EEF1B2P4-201ENST00000551398 348 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC011611.1-201ENST00000552179 197 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AL365503.1-201ENST00000605247 905 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 AC024560.3-201ENST00000608482 349 ntBASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
CCDC3Q9BQI4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC087359.1-201ENST00000508335 1740 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 SNORD51-201ENST00000384320 80 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 RNU1-89P-201ENST00000384592 164 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 GLRXP1-201ENST00000423261 334 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 SNRPEP7-201ENST00000438350 220 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 HSPE1P28-201ENST00000443139 211 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MIR2114-201ENST00000516645 80 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 COX6CP8-201ENST00000522620 226 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MAGOH2P-202ENST00000584384 429 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC010928.3-201ENST00000587712 541 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AP000811.1-201ENST00000603803 651 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC018714.1-201ENST00000605028 208 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL139344.1-201ENST00000605228 195 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL133507.1-201ENST00000605269 557 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 HMGN2P28-201ENST00000606102 262 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MIR8058-201ENST00000615737 89 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL596245.1-201ENST00000618994 362 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms