Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC233981.2-201ENST00000611524 1614 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 SNORA51.4-201ENST00000364993 124 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 MIR142-201ENST00000384835 87 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AL645939.1-201ENST00000453429 797 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 NAMPTP2-201ENST00000505629 1115 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 TTC39CP1-201ENST00000512513 755 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC008015.1-201ENST00000555505 465 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
VPS13AQ96RL7 AC103988.1-201ENST00000566382 2177 ntBASIC1.89□□□□□ -2.11
VPS13AQ96RL7 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 PSMA6P4-201ENST00000603247 718 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 RPAP2P1-201ENST00000603626 1168 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 CDC27P2-201ENST00000425026 1922 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC021146.8-201ENST00000507455 733 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC005730.3-201ENST00000583067 366 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 Y_RNA.36-201ENST00000362602 112 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 RNU1-51P-201ENST00000365345 176 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 RNU1-138P-201ENST00000384093 164 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 UBE2V1P5-201ENST00000440070 405 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 RN7SKP40-201ENST00000517211 242 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AP000889.2-201ENST00000532684 490 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC006116.7-201ENST00000590141 756 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 AC131902.3-201ENST00000611767 581 ntBASIC1.88□□□□□ -2.11
VPS13AQ96RL7 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS13AQ96RL7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AL391987.6-201ENST00000305671 199 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AC092473.1-201ENST00000441098 221 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AL513321.1-201ENST00000441175 761 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 CDC42P1-201ENST00000456658 548 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AC120053.1-201ENST00000607706 736 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 Y_RNA.783-201ENST00000613546 102 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 MIR6132-201ENST00000622083 109 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 MIR3074-201ENST00000384885 81 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 SNORA48.3-201ENST00000391081 134 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 MIR1294-201ENST00000408503 142 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AL161670.1-201ENST00000554348 137 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AL845331.3-202ENST00000562856 261 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 AC084768.2-201ENST00000622736 221 ntBASIC1.87□□□□□ -2.11
VPS13AQ96RL7 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 MTND2P29-201ENST00000438595 412 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 RPL36AP33-201ENST00000450395 310 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 TOMM22P6-201ENST00000465035 409 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 MIR6767-201ENST00000637302 66 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 PNPT1P2-201ENST00000456768 2050 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS13AQ96RL7 AC025048.6-202ENST00000627667 438 ntBASIC1.86□□□□□ -2.11
VPS13AQ96RL7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
VPS13AQ96RL7 XPOTP1-201ENST00000443317 2398 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 SNORA7.1-201ENST00000363750 139 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 RPL21P18-201ENST00000469899 480 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 IGKV2D-36-201ENST00000518643 226 ntBASIC1.85□□□□□ -2.11
VPS13AQ96RL7 RFPL1S-203ENST00000539579 330 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms