Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CLIP3Q96DZ5 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
CLIP3Q96DZ5 MTND5P33-201ENST00000571250 1450 ntBASIC4.65□□□□□ -1.66
CLIP3Q96DZ5 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.46-201ENST00000362695 102 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.86-201ENST00000363020 111 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 SNORA73.1-201ENST00000363107 205 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RNA5SP513-201ENST00000364648 118 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 SNORA56-201ENST00000383966 129 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 MIR298-201ENST00000401212 88 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RPS16P5-201ENST00000406501 404 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RN7SKP235-201ENST00000410662 305 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RNU6-195P-201ENST00000411352 109 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 TBCAP2-201ENST00000416175 326 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL590139.1-201ENST00000416267 400 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL137014.1-201ENST00000420490 1226 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RPL7P57-201ENST00000423238 740 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL450023.3-201ENST00000440592 271 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 CALM1P1-201ENST00000442082 433 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AURKAPS2-201ENST00000454983 333 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RPL23AP56-201ENST00000460778 453 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC096576.1-201ENST00000489014 359 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL139099.1-201ENST00000497398 403 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 RNU6-1095P-201ENST00000516148 108 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 Vault.1-201ENST00000516474 102 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC090281.1-201ENST00000523019 276 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC126177.3-201ENST00000551839 688 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL360085.1-201ENST00000604713 532 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 OR10AB1P-201ENST00000609613 938 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC091905.1-201ENST00000624400 311 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 PISRT1-201ENST00000626175 531 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC009902.3-201ENST00000606235 2172 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 AC008725.1-201ENST00000605123 2263 ntBASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CLIP3Q96DZ5 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RNU6-845P-201ENST00000362578 103 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.72-201ENST00000362894 103 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 SNORD81.2-201ENST00000365153 76 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.419-201ENST00000384041 102 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RPL7P25-201ENST00000404151 721 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RPS4XP9-201ENST00000405151 780 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RPS7P15-201ENST00000415804 584 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 PIGFP2-201ENST00000421400 651 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC002486.1-201ENST00000435098 391 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 HMGN2P21-201ENST00000447764 270 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC073264.2-201ENST00000448886 166 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 SNRPGP6-201ENST00000451124 220 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC013356.1-201ENST00000489027 564 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 IGLV2-34-201ENST00000490007 283 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RNU6-1281P-201ENST00000516223 105 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RNU2-46P-201ENST00000517038 113 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RNU6-201P-201ENST00000517100 61 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AP003467.2-201ENST00000520175 319 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL121603.1-201ENST00000553815 142 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC006349.1-201ENST00000555526 235 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms