Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 RPS3AP25-201ENST00000411660 793 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 XKRYP1-201ENST00000423438 492 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 BX119904.4-201ENST00000424402 301 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 XKRYP2-201ENST00000432915 492 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 MTCO1P27-201ENST00000448269 226 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC104308.1-201ENST00000454621 333 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC007967.1-201ENST00000455422 1159 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AL136097.1-201ENST00000456945 913 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 RNA5SP310-201ENST00000459084 116 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 MTND2P14-201ENST00000482139 351 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 RN7SL271P-201ENST00000487601 295 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 HMGB1P36-201ENST00000487709 576 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC147055.4-201ENST00000504399 745 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 AL163153.1-201ENST00000554223 283 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC105224.1-201ENST00000587055 421 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC009570.1-201ENST00000609599 745 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 MIR7151-201ENST00000617477 60 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 AC008443.7-201ENST00000622195 246 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 AL159972.1-201ENST00000625150 448 ntBASIC4.02□□□□□ -1.77
SKA1Q96BD8 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA1Q96BD8 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA1Q96BD8 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SKA1Q96BD8 UBE3AP2-201ENST00000429033 2259 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA1Q96BD8 SNORD35B-201ENST00000363660 87 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 RNU6-777P-201ENST00000364265 104 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 RNU6-76P-201ENST00000384060 104 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 MTCO1P17-201ENST00000411522 491 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 TPMTP3-201ENST00000411928 735 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC009237.5-201ENST00000414271 501 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 TMEM167AP1-201ENST00000423409 219 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 OR4K11P-201ENST00000431829 904 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 RPL26P6-201ENST00000440913 438 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AL500522.2-201ENST00000448562 343 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 RPS17P13-201ENST00000448974 407 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC034222.1-201ENST00000494052 532 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC034159.1-201ENST00000513885 583 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 MTND5P4-201ENST00000514978 288 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 HMGN1P28-201ENST00000521340 364 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 SETP2-201ENST00000553886 926 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC034268.2-201ENST00000571784 482 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC012417.1-201ENST00000582307 1039 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC006539.2-201ENST00000601729 572 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC072039.2-201ENST00000608883 439 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC009268.2-201ENST00000621925 457 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC243312.2-201ENST00000623340 601 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA1Q96BD8 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA1Q96BD8 AP000526.1-201ENST00000603308 1388 ntBASIC4.01□□□□□ -1.77
SKA1Q96BD8 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SKA1Q96BD8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA1Q96BD8 AC008568.2-201ENST00000623862 2313 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4□□□□□ -1.77
SKA1Q96BD8 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA1Q96BD8 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4□□□□□ -1.77
SKA1Q96BD8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SKA1Q96BD8 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4□□□□□ -1.77
SKA1Q96BD8 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4□□□□□ -1.77
SKA1Q96BD8 RNU5A-1-201ENST00000362698 116 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 ACEA_U3.1-201ENST00000363057 217 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 SNORD113-6-201ENST00000363345 75 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4□□□□□ -1.77
SKA1Q96BD8 RNU6-723P-201ENST00000383973 107 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 RNU6-213P-201ENST00000384051 104 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 MIR7-3-201ENST00000384898 110 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 RN7SKP266-201ENST00000410232 287 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4□□□□□ -1.77
SKA1Q96BD8 AL022400.1-201ENST00000423946 935 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 AC233728.2-201ENST00000425348 757 ntBASIC4□□□□□ -1.77
SKA1Q96BD8 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA1Q96BD8 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms