Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 HSPE1P12-201ENST00000412576 301 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 RPL23AP46-201ENST00000438548 490 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL500522.2-201ENST00000448562 343 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 RPS15AP1-201ENST00000457423 391 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC139783.2-201ENST00000504847 1145 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 HSPE1P3-201ENST00000559254 309 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC018638.8-201ENST00000588755 281 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AP001429.1-201ENST00000602568 530 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 YWHAEP7-203ENST00000622054 312 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC005086.4-201ENST00000623065 213 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AL158801.5-201ENST00000623123 465 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC012442.3-202ENST00000636742 206 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 CCT4P2-201ENST00000233836 1548 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC016588.2-201ENST00000632484 3021 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC097461.1-201ENST00000568928 2821 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC097504.1-201ENST00000515103 2415 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC006971.1-201ENST00000407916 4486 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 OR52B1P-201ENST00000316506 909 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 Y_RNA.159-201ENST00000363674 87 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SNORD81.2-201ENST00000365153 76 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SNORA70.4-201ENST00000365509 134 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AL078604.1-201ENST00000404609 466 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CTSL3P-202ENST00000412179 788 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AL691449.1-201ENST00000426570 421 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC010881.1-201ENST00000433830 235 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SEPT14P3-201ENST00000439401 183 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AL732372.2-207ENST00000445840 183 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SEPT14P2-201ENST00000453405 183 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SEPT14P4-201ENST00000513445 186 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 FO082796.1-201ENST00000523795 183 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC068993.1-201ENST00000546724 589 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SUB1P2-201ENST00000556401 297 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SULT1C2P1-202ENST00000562418 459 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 MIR5685-201ENST00000579080 79 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC015917.1-201ENST00000579654 510 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC068790.5-201ENST00000602741 355 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC006363.1-201ENST00000603806 463 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CR392039.5-201ENST00000623201 510 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 AC015813.6-201ENST00000624409 5808 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 NMD3P1-201ENST00000439704 1488 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 CKAP2P1-201ENST00000555477 2049 ntBASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.5□□□□□ -1.53
USHBP1Q8N6Y0 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-952P-201ENST00000391164 108 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 PTMAP2-201ENST00000397627 327 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 OR51AB1P-201ENST00000429046 620 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RSU1P2-202ENST00000437884 485 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RPS15AP17-201ENST00000470598 390 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-202P-201ENST00000515998 96 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 Vault.3-201ENST00000516676 95 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC037471.2-201ENST00000564941 598 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC099489.2-201ENST00000574976 260 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms