Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 RN7SKP44-201ENST00000363602 316 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 U1.1-201ENST00000384101 164 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 RNU1-89P-201ENST00000384592 164 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 MTCYBP24-201ENST00000420387 1106 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC005517.2-201ENST00000424673 553 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 RPL39P6-201ENST00000448289 150 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AL672167.3-201ENST00000465951 960 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC138853.1-201ENST00000503549 823 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC021678.1-201ENST00000505195 936 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC093809.1-201ENST00000509155 340 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC090877.1-201ENST00000561418 344 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC106785.1-201ENST00000565935 262 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 MIR4528-201ENST00000577763 90 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC013476.2-201ENST00000614456 459 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AL139089.1-201ENST00000620372 975 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC099654.12-201ENST00000639868 649 ntBASIC4.64□□□□□ -1.67
VPS53Q5VIR6 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC090337.1-201ENST00000579651 2074 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 ZNF734P-201ENST00000419494 1534 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 RNA5SP322-201ENST00000363617 119 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC025750.1-201ENST00000399891 379 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 HMGB1P17-201ENST00000403495 628 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MTCYBP36-201ENST00000404146 440 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC092832.1-201ENST00000422934 400 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 RPL7P2-201ENST00000427639 268 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 SNORD42A-201ENST00000459584 64 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MEMO1P3-201ENST00000459811 302 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC092757.1-201ENST00000467293 467 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC126182.1-201ENST00000478134 357 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 RN7SL323P-201ENST00000494712 295 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC026412.2-201ENST00000512270 1075 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 RN7SKP298-201ENST00000515950 94 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC025881.1-201ENST00000518851 512 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MTCYBP41-201ENST00000528913 1123 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AP002453.2-201ENST00000533503 320 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC141257.3-201ENST00000572906 215 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MIR4286-201ENST00000580651 93 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MIR4637-201ENST00000582405 84 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC015871.2-201ENST00000603605 948 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 AC095031.1-201ENST00000623685 672 ntBASIC4.63□□□□□ -1.67
VPS53Q5VIR6 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.63□□□□□ -1.67
VPS53Q5VIR6 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 FAM35DP-201ENST00000323387 2712 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 MIR30B-201ENST00000384850 88 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 SOD2P1-201ENST00000396543 562 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 SNRPEP2-201ENST00000397592 279 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 EIF5P1-201ENST00000400019 1231 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 RNA5SP239-201ENST00000410218 129 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 RN7SKP177-201ENST00000410567 355 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 AC109780.2-201ENST00000413467 845 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS53Q5VIR6 AL031667.1-201ENST00000440222 725 ntBASIC4.62□□□□□ -1.67
VPS53Q5VIR6 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms