Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL121972.1-201ENST00000402023 252 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RPS4XP8-201ENST00000402039 771 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RPS20P2-201ENST00000402520 389 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RPL31P52-201ENST00000407532 367 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.65□□□□□ -1.67
USP39Q53GS9 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.65□□□□□ -1.67
USP39Q53GS9 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.65□□□□□ -1.67
USP39Q53GS9 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.65□□□□□ -1.67
USP39Q53GS9 MTCO3P46-201ENST00000425787 232 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AL138785.1-201ENST00000425821 331 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RPS29P17-201ENST00000430795 166 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 CBWD4P-201ENST00000445695 655 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AL121877.1-201ENST00000453704 622 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RPL23AP12-201ENST00000467573 473 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC010683.1-201ENST00000473673 378 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC025164.1-201ENST00000496249 478 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AC103851.1-201ENST00000506833 274 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.65□□□□□ -1.67
USP39Q53GS9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.65□□□□□ -1.67
USP39Q53GS9 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.65□□□□□ -1.67
USP39Q53GS9 SUB1P2-201ENST00000556401 297 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC093227.2-201ENST00000589357 285 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC243960.4-201ENST00000600532 288 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AL359999.1-201ENST00000604513 294 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 LINC00901.1-201ENST00000617252 152 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 ZYXP1-201ENST00000617638 118 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 AC138305.3-201ENST00000624988 240 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 TPTEP1-208ENST00000636884 213 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
USP39Q53GS9 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 LINC00622-201ENST00000562811 1570 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 MTND4P27-201ENST00000450813 1354 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC125257.1-201ENST00000560400 2930 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 RNU6-251P-201ENST00000363235 104 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RNU6-115P-201ENST00000364310 107 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AL590762.2-201ENST00000395798 571 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RN7SKP32-201ENST00000410167 303 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RPS7P15-201ENST00000415804 584 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 OR51AB1P-201ENST00000429046 620 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 RSU1P2-202ENST00000437884 485 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC004938.1-201ENST00000438468 308 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RPS27AP17-201ENST00000463344 455 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC108751.2-201ENST00000469993 231 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC023194.1-201ENST00000493084 308 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC110792.2-201ENST00000510278 224 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC112206.3-201ENST00000514578 389 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 RNU7-30P-201ENST00000516835 62 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RN7SKP116-201ENST00000516902 319 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AP000827.1-201ENST00000527814 258 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.64□□□□□ -1.67
USP39Q53GS9 TPMTP1-201ENST00000592307 737 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC007687.1-201ENST00000602704 304 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC113139.1-201ENST00000605049 239 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 MIR98-201ENST00000606724 119 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AC243773.3-201ENST00000613270 256 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 RMST_7.1-201ENST00000621935 268 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 AL161637.1-201ENST00000622380 412 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 AC092162.3-201ENST00000624511 1624 ntBASIC4.64□□□□□ -1.67
USP39Q53GS9 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.64□□□□□ -1.67
USP39Q53GS9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP39Q53GS9 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
USP39Q53GS9 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms