Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 ELL2P3-201ENST00000457883 1602 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC006378.2-201ENST00000623178 2476 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RNU6-744P-201ENST00000365557 107 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RNU6-1316P-201ENST00000384242 108 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AL583834.1-201ENST00000406943 343 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 MTCO1P17-201ENST00000411522 491 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 HSFY4P-201ENST00000415994 1181 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RPS27AP14-201ENST00000422868 454 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 OR5BE1P-201ENST00000425977 939 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC129850.1-201ENST00000436203 508 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AF228730.2-201ENST00000438784 848 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 KATNBL1P3-201ENST00000443475 909 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 HMGN2P21-201ENST00000447764 270 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RPL7P52-201ENST00000449200 742 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC115115.1-201ENST00000449927 248 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC073387.1-201ENST00000453261 709 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RPL31P3-201ENST00000458430 332 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RPS4XP10-201ENST00000465034 731 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC023424.2-201ENST00000493479 777 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RPL5P23-201ENST00000496040 868 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 PRELID3BP7-201ENST00000503606 469 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 BNIP3P41-201ENST00000503774 571 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC104619.4-201ENST00000510773 249 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 Vault.1-201ENST00000516474 102 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AL121766.1-201ENST00000547436 487 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AL451044.1-201ENST00000604867 238 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC004853.1-201ENST00000604902 698 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC009090.3-201ENST00000616553 565 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC004825.2-201ENST00000616634 455 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC073530.2-201ENST00000623987 261 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 OR5BE1P-202ENST00000641168 1176 ntBASIC3.84□□□□□ -1.79
COL28A1Q2UY09 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.84□□□□□ -1.79
COL28A1Q2UY09 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL28A1Q2UY09 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.84□□□□□ -1.8
COL28A1Q2UY09 AL049780.3-201ENST00000624612 1583 ntBASIC3.84□□□□□ -1.8
COL28A1Q2UY09 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL28A1Q2UY09 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
COL28A1Q2UY09 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
COL28A1Q2UY09 AL133412.1-201ENST00000380194 2992 ntBASIC3.84□□□□□ -1.8
COL28A1Q2UY09 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 PRO1804-201ENST00000623780 2050 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 GNG5P1-201ENST00000255500 204 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 Y_RNA.234-201ENST00000364409 97 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MT-TH-201ENST00000387441 69 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 U3.26-201ENST00000391236 204 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 RPL7P8-201ENST00000411964 730 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 NPM1P11-201ENST00000417106 855 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AL365184.2-201ENST00000431139 435 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MTCYBP45-201ENST00000435243 565 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 LARP1BP3-201ENST00000437229 869 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 RPL23AP89-201ENST00000439324 255 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AP000542.1-201ENST00000448473 371 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC009961.3-201ENST00000449832 765 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 KATNBL1P6-201ENST00000453433 915 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 ZNF114P1-201ENST00000453500 292 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 snoU13.8-201ENST00000458890 104 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 S100A11P1-201ENST00000477525 312 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 HSPD1P15-201ENST00000505573 1122 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC006390.1-201ENST00000508068 283 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 HMGN1P11-201ENST00000508668 303 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.83□□□□□ -1.8
COL28A1Q2UY09 AC034159.1-201ENST00000513885 583 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 NDUFA5P2-201ENST00000519723 344 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 HIGD1AP10-201ENST00000527837 282 ntBASIC3.83□□□□□ -1.8
COL28A1Q2UY09 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms