Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.24□□□□□ -1.89
CUX1P39880 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.24□□□□□ -1.89
CUX1P39880 OR1S1-201ENST00000624470 978 ntBASIC3.24□□□□□ -1.89
CUX1P39880 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
CUX1P39880 AL109809.4-201ENST00000603520 2185 ntBASIC3.23□□□□□ -1.89
CUX1P39880 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CUX1P39880 U3.37-201ENST00000408528 213 ntBASIC3.23□□□□□ -1.89
CUX1P39880 RNU4-62P-201ENST00000410125 130 ntBASIC3.23□□□□□ -1.89
CUX1P39880 AC073310.1-201ENST00000423226 1033 ntBASIC3.23□□□□□ -1.89
CUX1P39880 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CUX1P39880 NDUFB4P9-201ENST00000511646 388 ntBASIC3.23□□□□□ -1.89
CUX1P39880 AC008126.1-201ENST00000549019 480 ntBASIC3.23□□□□□ -1.89
CUX1P39880 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.23□□□□□ -1.89
CUX1P39880 MIR4303-201ENST00000581299 66 ntBASIC3.23□□□□□ -1.89
CUX1P39880 AC017076.1-201ENST00000607613 578 ntBASIC3.23□□□□□ -1.89
CUX1P39880 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CUX1P39880 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.22□□□□□ -1.89
CUX1P39880 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CUX1P39880 XIAPP3-201ENST00000312918 795 ntBASIC3.22□□□□□ -1.89
CUX1P39880 BTBD10P2-201ENST00000404779 676 ntBASIC3.22□□□□□ -1.89
CUX1P39880 AL590084.1-201ENST00000407885 387 ntBASIC3.22□□□□□ -1.89
CUX1P39880 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.22□□□□□ -1.89
CUX1P39880 AP000926.1-201ENST00000479573 241 ntBASIC3.22□□□□□ -1.89
CUX1P39880 GZMAP1-201ENST00000503054 631 ntBASIC3.22□□□□□ -1.89
CUX1P39880 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.22□□□□□ -1.89
CUX1P39880 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.22□□□□□ -1.89
CUX1P39880 ABI1P1-201ENST00000603375 1120 ntBASIC3.22□□□□□ -1.89
CUX1P39880 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.22□□□□□ -1.89
CUX1P39880 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CUX1P39880 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CUX1P39880 AL353746.1-201ENST00000566293 6881 ntBASIC3.22□□□□□ -1.89
CUX1P39880 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CUX1P39880 AC107021.2-201ENST00000567714 2095 ntBASIC3.21□□□□□ -1.9
CUX1P39880 MIR378A-201ENST00000362177 66 ntBASIC3.21□□□□□ -1.9
CUX1P39880 FGF7P8-201ENST00000402994 292 ntBASIC3.21□□□□□ -1.9
CUX1P39880 MTCO3P30-201ENST00000426425 670 ntBASIC3.21□□□□□ -1.9
CUX1P39880 AC129850.1-201ENST00000436203 508 ntBASIC3.21□□□□□ -1.9
CUX1P39880 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.21□□□□□ -1.9
CUX1P39880 RNU6-1334P-201ENST00000516032 105 ntBASIC3.21□□□□□ -1.9
CUX1P39880 AL356575.1-201ENST00000603008 283 ntBASIC3.21□□□□□ -1.9
CUX1P39880 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.21□□□□□ -1.9
CUX1P39880 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CUX1P39880 U8.9-201ENST00000365667 134 ntBASIC3.2□□□□□ -1.9
CUX1P39880 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.2□□□□□ -1.9
CUX1P39880 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.2□□□□□ -1.9
CUX1P39880 RNU6-250P-201ENST00000516958 103 ntBASIC3.2□□□□□ -1.9
CUX1P39880 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.2□□□□□ -1.9
CUX1P39880 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CUX1P39880 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.19□□□□□ -1.9
CUX1P39880 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.19□□□□□ -1.9
CUX1P39880 AC027124.2-201ENST00000428249 105 ntBASIC3.19□□□□□ -1.9
CUX1P39880 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.19□□□□□ -1.9
CUX1P39880 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.19□□□□□ -1.9
CUX1P39880 RPL34P26-201ENST00000445636 354 ntBASIC3.19□□□□□ -1.9
CUX1P39880 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.19□□□□□ -1.9
CUX1P39880 HMGB3P15-201ENST00000507326 574 ntBASIC3.19□□□□□ -1.9
CUX1P39880 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.19□□□□□ -1.9
CUX1P39880 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.19□□□□□ -1.9
CUX1P39880 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC3.19□□□□□ -1.9
CUX1P39880 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CUX1P39880 AC019129.1-201ENST00000403786 261 ntBASIC3.19□□□□□ -1.9
CUX1P39880 MIR1294-201ENST00000408503 142 ntBASIC3.19□□□□□ -1.9
CUX1P39880 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.19□□□□□ -1.9
CUX1P39880 AC104435.1-201ENST00000483483 166 ntBASIC3.19□□□□□ -1.9
CUX1P39880 AC068781.1-201ENST00000488231 618 ntBASIC3.19□□□□□ -1.9
CUX1P39880 AC068790.3-201ENST00000602988 553 ntBASIC3.19□□□□□ -1.9
CUX1P39880 MTND5P7-201ENST00000413558 1798 ntBASIC3.18□□□□□ -1.9
CUX1P39880 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CUX1P39880 AC006378.2-201ENST00000623178 2476 ntBASIC3.18□□□□□ -1.9
CUX1P39880 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CUX1P39880 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CUX1P39880 AP1B1P2-201ENST00000416196 106 ntBASIC3.18□□□□□ -1.9
CUX1P39880 BTF3P4-201ENST00000418852 495 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX1P39880 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.18□□□□□ -1.9
CUX1P39880 RPL23AP16-201ENST00000441715 421 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX1P39880 MTCO1P42-201ENST00000457379 726 ntBASIC3.18□□□□□ -1.9
CUX1P39880 TMEM248P1-201ENST00000510579 951 ntBASIC3.18□□□□□ -1.9
CUX1P39880 TTC39CP1-201ENST00000512513 755 ntBASIC3.18□□□□□ -1.9
CUX1P39880 MAGOH2P-202ENST00000584384 429 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.6-201ENST00000603753 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.11-201ENST00000604059 253 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.10-201ENST00000604330 253 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AC008162.1-201ENST00000604718 254 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.1-201ENST00000604752 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.2-201ENST00000604983 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.5-201ENST00000605253 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.4-201ENST00000605279 254 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.12-201ENST00000605291 253 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.8-201ENST00000605353 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.9-201ENST00000605428 253 ntBASIC3.18□□□□□ -1.9
CUX1P39880 AL670379.7-201ENST00000605823 252 ntBASIC3.18□□□□□ -1.9
CUX1P39880 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.18□□□□□ -1.9
CUX1P39880 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CUX1P39880 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.17□□□□□ -1.9
CUX1P39880 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CUX1P39880 SET-203ENST00000372688 801 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX1P39880 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CUX1P39880 AF274854.1-201ENST00000413236 615 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms