Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC093156.1-201ENST00000440382 670 ntBASIC5.62□□□□□ -1.51
LIG1P18858 IPO7P1-201ENST00000442031 636 ntBASIC5.62□□□□□ -1.51
LIG1P18858 RPL34P20-201ENST00000442771 351 ntBASIC5.62□□□□□ -1.51
LIG1P18858 RPS26P56-201ENST00000444468 240 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG1P18858 AL445433.1-201ENST00000457507 257 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC097484.1-201ENST00000471148 389 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC055855.1-201ENST00000489563 579 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG1P18858 TTC39CP1-201ENST00000512513 755 ntBASIC5.62□□□□□ -1.51
LIG1P18858 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG1P18858 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG1P18858 AC022790.1-201ENST00000522872 204 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG1P18858 DEFB109D-201ENST00000529497 240 ntBASIC5.62□□□□□ -1.51
LIG1P18858 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG1P18858 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG1P18858 AC093012.1-202ENST00000549403 582 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG1P18858 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG1P18858 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG1P18858 POLR3GP2-201ENST00000588366 668 ntBASIC5.62□□□□□ -1.51
LIG1P18858 RPL23AP92-201ENST00000603609 255 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AC105254.2-201ENST00000603636 436 ntBASIC5.62□□□□□ -1.51
LIG1P18858 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AL080274.1-201ENST00000605565 220 ntBASIC5.62□□□□□ -1.51
LIG1P18858 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG1P18858 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG1P18858 AL078596.1-201ENST00000624856 447 ntBASIC5.62□□□□□ -1.51
LIG1P18858 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG1P18858 MIR6715B-201ENST00000637172 77 ntBASIC5.62□□□□□ -1.51
LIG1P18858 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.62□□□□□ -1.51
LIG1P18858 MTND5P1-201ENST00000445440 1375 ntBASIC5.62□□□□□ -1.51
LIG1P18858 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG1P18858 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG1P18858 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG1P18858 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LIG1P18858 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
LIG1P18858 XPOTP1-201ENST00000443317 2398 ntBASIC5.62□□□□□ -1.51
LIG1P18858 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LIG1P18858 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG1P18858 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG1P18858 AL022322.2-201ENST00000624072 20397 ntBASIC5.61□□□□□ -1.51
LIG1P18858 OR5P1P-201ENST00000299512 925 ntBASIC5.61□□□□□ -1.51
LIG1P18858 RNA5SP123-201ENST00000363244 119 ntBASIC5.61□□□□□ -1.51
LIG1P18858 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
LIG1P18858 RNU6-1297P-201ENST00000384415 104 ntBASIC5.61□□□□□ -1.51
LIG1P18858 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG1P18858 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG1P18858 RNU4-26P-201ENST00000410270 107 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC092832.1-201ENST00000422934 400 ntBASIC5.61□□□□□ -1.51
LIG1P18858 FABP7P2-201ENST00000429946 379 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG1P18858 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG1P18858 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG1P18858 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG1P18858 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.61□□□□□ -1.51
LIG1P18858 RHOT1P3-201ENST00000436571 331 ntBASIC5.61□□□□□ -1.51
LIG1P18858 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG1P18858 PSMD10P3-201ENST00000437000 448 ntBASIC5.61□□□□□ -1.51
LIG1P18858 TRAPPC2P8-201ENST00000440676 396 ntBASIC5.61□□□□□ -1.51
LIG1P18858 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
LIG1P18858 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG1P18858 RN7SL329P-201ENST00000467740 299 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC006512.1-201ENST00000468816 291 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC108751.2-201ENST00000469993 231 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG1P18858 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG1P18858 AC005741.1-201ENST00000511094 432 ntBASIC5.61□□□□□ -1.51
LIG1P18858 Y_RNA.718-201ENST00000517110 102 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG1P18858 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG1P18858 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG1P18858 AC053481.3-201ENST00000577881 843 ntBASIC5.61□□□□□ -1.51
LIG1P18858 MIR4436B2-201ENST00000581415 91 ntBASIC5.61□□□□□ -1.51
LIG1P18858 MIR4436B1-201ENST00000583272 91 ntBASIC5.61□□□□□ -1.51
LIG1P18858 MIR4691-201ENST00000583764 85 ntBASIC5.61□□□□□ -1.51
LIG1P18858 MIR4443-201ENST00000585052 53 ntBASIC5.61□□□□□ -1.51
LIG1P18858 AC011447.4-201ENST00000587562 111 ntBASIC5.61□□□□□ -1.51
LIG1P18858 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG1P18858 AC068870.2-201ENST00000620635 389 ntBASIC5.61□□□□□ -1.51
LIG1P18858 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG1P18858 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LIG1P18858 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG1P18858 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 THAP12P4-201ENST00000528321 2266 ntBASIC5.6□□□□□ -1.51
LIG1P18858 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 LARP1BP1-201ENST00000506036 1359 ntBASIC5.6□□□□□ -1.51
LIG1P18858 Y_RNA.395-201ENST00000383945 109 ntBASIC5.6□□□□□ -1.51
LIG1P18858 Y_RNA.459-201ENST00000384251 102 ntBASIC5.6□□□□□ -1.51
LIG1P18858 SNORD116-29-201ENST00000384516 83 ntBASIC5.6□□□□□ -1.51
LIG1P18858 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LIG1P18858 AL359634.1-202ENST00000404721 284 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG1P18858 RPL30P3-201ENST00000424262 333 ntBASIC5.6□□□□□ -1.51
LIG1P18858 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms