Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 SNORD116-1-201ENST00000384335 95 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 RNU5A-2P-201ENST00000384337 116 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 RNA5SP293-201ENST00000410527 113 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD4P09016 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AL022400.1-201ENST00000423946 935 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC073063.1-201ENST00000434352 607 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 MTND4P32-201ENST00000437189 1237 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 CYCSP32-201ENST00000440548 321 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD4P09016 HMGN3P1-201ENST00000453847 193 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD4P09016 RN7SL442P-201ENST00000473804 320 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 RPS3AP43-201ENST00000479743 781 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 RNF138P1-201ENST00000502765 546 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC111000.2-201ENST00000507775 550 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 MTND1P22-201ENST00000510572 951 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 GMPSP1-201ENST00000514075 579 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 MTCO1P30-201ENST00000515244 580 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 RN7SKP289-201ENST00000517244 295 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC027309.2-201ENST00000520566 192 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD4P09016 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 ISCA1P3-201ENST00000577104 373 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD4P09016 AC011471.1-201ENST00000585766 187 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC091946.2-201ENST00000606105 291 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD4P09016 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD4P09016 AL513302.2-201ENST00000562313 1842 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 AC007496.3-201ENST00000624987 3443 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 MTND5P27-201ENST00000428871 1720 ntBASIC3.27□□□□□ -1.89
HOXD4P09016 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HOXD4P09016 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD4P09016 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD4P09016 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD4P09016 RNU6-251P-201ENST00000363235 104 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 Y_RNA.111-201ENST00000363248 100 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 RNU6-553P-201ENST00000364047 96 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 EIF5P1-201ENST00000400019 1231 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AL121978.1-201ENST00000402778 359 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AL450338.1-201ENST00000407987 512 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AL390023.1-201ENST00000428836 262 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 B3GNT2P1-201ENST00000434960 952 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC241584.1-201ENST00000438469 1241 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 AC010401.1-201ENST00000463867 348 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 SNRPGP3-201ENST00000469405 227 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 RN7SL601P-201ENST00000471221 293 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 MTND3P7-201ENST00000474435 343 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 RPL7P38-201ENST00000488396 739 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 HSPD1P15-201ENST00000505573 1122 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 AC010265.1-201ENST00000513509 211 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 RN7SKP13-201ENST00000515933 244 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD4P09016 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 OR4R3P-201ENST00000525084 838 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AP000790.1-201ENST00000528891 737 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 YWHAQP7-201ENST00000603536 658 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AL022161.1-201ENST00000604390 213 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC005000.2-201ENST00000605468 310 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC124312.4-201ENST00000605533 310 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC064807.4-201ENST00000607201 407 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC245008.1-201ENST00000608123 476 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD4P09016 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 AP003355.3-201ENST00000623465 114 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms