Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC025260.1-201ENST00000548858 430 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC012182.1-201ENST00000570133 895 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
SPTA1P02549 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC1.87□□□□□ -2.11
SPTA1P02549 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SPTA1P02549 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SPTA1P02549 SNORD6-201ENST00000365444 73 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.87□□□□□ -2.11
SPTA1P02549 AL591704.1-201ENST00000432574 275 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.87□□□□□ -2.11
SPTA1P02549 AC233279.1-201ENST00000455300 423 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 RPL9P33-201ENST00000484311 566 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 RPL23AP63-201ENST00000498752 471 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 HMGB1P41-201ENST00000520234 440 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.87□□□□□ -2.11
SPTA1P02549 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.87□□□□□ -2.11
SPTA1P02549 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC1.87□□□□□ -2.11
SPTA1P02549 VN1R79P-201ENST00000593540 513 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC091834.1-201ENST00000614543 472 ntBASIC1.87□□□□□ -2.11
SPTA1P02549 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.87□□□□□ -2.11
SPTA1P02549 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SPTA1P02549 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.86□□□□□ -2.11
SPTA1P02549 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.86□□□□□ -2.11
SPTA1P02549 AC092427.1-202ENST00000430569 476 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 RNU6ATAC39P-201ENST00000516309 149 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.86□□□□□ -2.11
SPTA1P02549 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.86□□□□□ -2.11
SPTA1P02549 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC1.86□□□□□ -2.11
SPTA1P02549 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
SPTA1P02549 RNU6-984P-201ENST00000363236 109 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 SNORA51.11-201ENST00000384442 131 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 OFD1P1Y-201ENST00000411756 1225 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.86□□□□□ -2.11
SPTA1P02549 HMGB1P27-201ENST00000431429 603 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.86□□□□□ -2.11
SPTA1P02549 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SPTA1P02549 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.86□□□□□ -2.11
SPTA1P02549 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.86□□□□□ -2.11
SPTA1P02549 AL590004.2-201ENST00000404787 371 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AC104332.2-201ENST00000429959 156 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 MTCYBP31-201ENST00000438855 1122 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AL645939.1-201ENST00000453429 797 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 EIF2S2P4-201ENST00000461070 984 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.85□□□□□ -2.11
SPTA1P02549 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SPTA1P02549 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.85□□□□□ -2.11
SPTA1P02549 AC006116.7-201ENST00000590141 756 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AC087468.1-201ENST00000604365 630 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 CYP3A51P-201ENST00000633513 256 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.85□□□□□ -2.11
SPTA1P02549 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SPTA1P02549 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.85□□□□□ -2.11
SPTA1P02549 RNA5SP190-201ENST00000365222 118 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.85□□□□□ -2.11
SPTA1P02549 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.85□□□□□ -2.11
SPTA1P02549 AC013404.1-201ENST00000413068 249 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 RPL7P37-201ENST00000425095 738 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.85□□□□□ -2.11
SPTA1P02549 RN7SL297P-201ENST00000483161 293 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 ARL4AP2-201ENST00000507378 601 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.85□□□□□ -2.11
SPTA1P02549 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.85□□□□□ -2.11
SPTA1P02549 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.85□□□□□ -2.11
SPTA1P02549 MIR3683-201ENST00000580847 82 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 AC019159.1-201ENST00000605094 187 ntBASIC1.85□□□□□ -2.11
SPTA1P02549 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SPTA1P02549 AC008432.1-201ENST00000615912 1320 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 AL391987.6-201ENST00000305671 199 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 RNU1-51P-201ENST00000365345 176 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 RNU6-1032P-201ENST00000384100 107 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 RNA5SP38-201ENST00000410750 119 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 ATG3P1-201ENST00000419507 911 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.84□□□□□ -2.11
SPTA1P02549 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC1.84□□□□□ -2.11
SPTA1P02549 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC1.84□□□□□ -2.11
SPTA1P02549 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.84□□□□□ -2.11
SPTA1P02549 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.84□□□□□ -2.11
SPTA1P02549 ATP5EP1-201ENST00000510257 156 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.84□□□□□ -2.11
SPTA1P02549 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SPTA1P02549 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.84□□□□□ -2.11
SPTA1P02549 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.84□□□□□ -2.12
SPTA1P02549 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
SPTA1P02549 RNU6-1027P-201ENST00000383998 107 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 SNORA48.3-201ENST00000391081 134 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 RPL36AP33-201ENST00000450395 310 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 AL162388.1-201ENST00000450912 352 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 RPL23AP55-201ENST00000498163 452 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.83□□□□□ -2.12
SPTA1P02549 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.83□□□□□ -2.12
SPTA1P02549 USP9YP5-201ENST00000511770 630 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 AL356266.1-201ENST00000623311 483 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
SPTA1P02549 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.83□□□□□ -2.12
SPTA1P02549 MIR181B1-201ENST00000385240 110 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.83□□□□□ -2.12
SPTA1P02549 AL353597.2-202ENST00000434901 373 ntBASIC1.83□□□□□ -2.12
SPTA1P02549 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.83□□□□□ -2.12
SPTA1P02549 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.83□□□□□ -2.12
SPTA1P02549 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms