Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORD121B-201ENST00000458838 81 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 SNORA84-201ENST00000459229 133 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC007547.1-201ENST00000462177 490 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC034236.1-201ENST00000469891 373 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC022034.3-201ENST00000471393 478 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC091167.1-201ENST00000492017 396 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC091885.1-201ENST00000506658 268 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 PSMA2P1-201ENST00000526365 646 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 COX6CP3-201ENST00000580869 223 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AL133255.1-201ENST00000606374 441 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AP005019.3-201ENST00000620418 560 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 AC027228.2-201ENST00000567141 2154 ntBASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC87Q9NVE4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MAPK10-328ENST00000641553 4009 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.231-201ENST00000364358 102 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.367-201ENST00000365544 101 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MIR558-201ENST00000384920 94 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RNU6-278P-201ENST00000390945 109 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 SNORD37.1-201ENST00000390968 65 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RPL32P23-201ENST00000397237 405 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RNU2-15P-201ENST00000410692 191 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RPL7AP25-201ENST00000423357 805 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MED13P1-201ENST00000428342 171 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 OR4K11P-201ENST00000431829 904 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 ERLEC1P1-201ENST00000433806 578 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 TDGF1P1-201ENST00000445734 527 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RPS4XP10-201ENST00000465034 731 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RN7SL303P-201ENST00000469773 251 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RPS15AP36-201ENST00000492022 382 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AL139099.1-201ENST00000497398 403 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RNU4-29P-201ENST00000515943 174 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 RN7SKP256-201ENST00000517201 314 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 OR4K8P-201ENST00000578842 1048 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 MIR4742-201ENST00000581069 85 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 ARF4P1-201ENST00000605447 541 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AL162730.1-201ENST00000605734 292 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AL022345.1-201ENST00000607292 135 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AC104237.2-201ENST00000612456 443 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AC114781.5-201ENST00000615297 108 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 NXPH1-205ENST00000602349 1953 ntBASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC87Q9NVE4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC025031.4-201ENST00000621248 3271 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC021146.4-201ENST00000309229 279 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 RNU5E-8P-201ENST00000363502 116 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.315-201ENST00000365117 102 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.419-201ENST00000384041 102 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 MIR659-201ENST00000384963 97 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL590762.2-201ENST00000395798 571 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL645937.1-202ENST00000421799 937 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL356387.2-201ENST00000422272 243 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 RPS12P10-201ENST00000427031 377 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 OR4F13P-201ENST00000428478 931 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms