Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL031176.1-201ENST00000604554 466 ntBASIC4.73□□□□□ -1.65
NUP88Q99567 HMGN2P28-201ENST00000606102 262 ntBASIC4.73□□□□□ -1.65
NUP88Q99567 AC131902.3-201ENST00000611767 581 ntBASIC4.73□□□□□ -1.65
NUP88Q99567 AC079597.1-201ENST00000624306 508 ntBASIC4.73□□□□□ -1.65
NUP88Q99567 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.73□□□□□ -1.65
NUP88Q99567 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NUP88Q99567 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
NUP88Q99567 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.73□□□□□ -1.65
NUP88Q99567 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.72□□□□□ -1.65
NUP88Q99567 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
NUP88Q99567 MIR23B-201ENST00000384832 97 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 RPS20P2-201ENST00000402520 389 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC092447.6-201ENST00000414578 210 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 SPA17P1-201ENST00000416656 452 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC004552.1-201ENST00000419089 348 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.72□□□□□ -1.65
NUP88Q99567 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 AC006548.1-201ENST00000427470 102 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AL445584.1-201ENST00000431451 330 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.72□□□□□ -1.65
NUP88Q99567 RPL23AP89-201ENST00000439324 255 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC092641.1-201ENST00000440229 772 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.72□□□□□ -1.65
NUP88Q99567 snoU109.4-201ENST00000458953 143 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 RPS26P3-201ENST00000470205 348 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 ACTR3P3-201ENST00000480448 893 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC090543.2-201ENST00000483963 348 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC004057.1-201ENST00000485827 348 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NUP88Q99567 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.72□□□□□ -1.65
NUP88Q99567 AC025445.1-201ENST00000502728 300 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NUP88Q99567 AC109464.2-201ENST00000510242 943 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 MTCO2P32-201ENST00000514865 403 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 MTCYBP20-201ENST00000524239 1129 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.72□□□□□ -1.65
NUP88Q99567 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.72□□□□□ -1.65
NUP88Q99567 MIR4429-201ENST00000580105 73 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.72□□□□□ -1.65
NUP88Q99567 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NUP88Q99567 AC068790.6-201ENST00000602558 258 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC011451.2-201ENST00000604303 598 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 AC104010.1-201ENST00000616889 150 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 CR381572.1-201ENST00000625098 102 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
NUP88Q99567 AC010149.2-201ENST00000637608 315 ntBASIC4.72□□□□□ -1.65
NUP88Q99567 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.72□□□□□ -1.65
NUP88Q99567 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.72□□□□□ -1.65
NUP88Q99567 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NUP88Q99567 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NUP88Q99567 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
NUP88Q99567 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.71□□□□□ -1.65
NUP88Q99567 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.71□□□□□ -1.65
NUP88Q99567 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
NUP88Q99567 RNU6-1249P-201ENST00000363237 111 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 SNORD35B-201ENST00000363660 87 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NUP88Q99567 MIR554-201ENST00000384874 96 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 U3.20-201ENST00000390909 217 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 LAP3P1-201ENST00000403648 294 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 Y_RNA.608-201ENST00000410647 95 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RNU2-47P-201ENST00000410649 186 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 MRPS18BP2-201ENST00000434310 759 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AC108734.1-201ENST00000439549 399 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 SNORD42A-201ENST00000459584 64 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 KLF3P2-201ENST00000465138 268 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 AC017037.1-201ENST00000508460 471 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.71□□□□□ -1.66
NUP88Q99567 RN7SKP298-201ENST00000515950 94 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 SNORA67.7-201ENST00000516664 135 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RNU7-143P-201ENST00000516781 65 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RNU6-352P-201ENST00000516908 107 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RNU6-1003P-201ENST00000517099 105 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AL391156.1-201ENST00000554965 554 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 HSPE1P5-201ENST00000561489 272 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.71□□□□□ -1.66
NUP88Q99567 AC025627.2-201ENST00000576220 160 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 AC060771.1-201ENST00000582031 164 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AC015871.2-201ENST00000603605 948 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AC245389.1-201ENST00000605141 529 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 RNA5SP108-201ENST00000605921 117 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 AL603839.4-201ENST00000624658 1005 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NUP88Q99567 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.71□□□□□ -1.66
NUP88Q99567 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
NUP88Q99567 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
NUP88Q99567 NOL8P1-201ENST00000508336 3529 ntBASIC4.71□□□□□ -1.66
NUP88Q99567 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NUP88Q99567 ZNF962P-201ENST00000443465 3140 ntBASIC4.7□□□□□ -1.66
NUP88Q99567 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms