Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SH3RF1Q7Z6J0 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SH3RF1Q7Z6J0 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-1078P-201ENST00000364522 103 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-200P-201ENST00000364743 107 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-432P-201ENST00000384196 109 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.785-201ENST00000384290 109 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-393P-201ENST00000384475 107 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-95P-201ENST00000384697 107 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 MIR141-201ENST00000384975 95 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC096664.2-201ENST00000411843 406 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC243428.1-201ENST00000421099 264 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 MRPS18CP6-201ENST00000423587 223 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RPL23AP38-201ENST00000423801 469 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AL359672.1-201ENST00000442302 409 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RPL9P32-201ENST00000464118 620 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC026784.1-201ENST00000507986 352 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-255P-201ENST00000516957 105 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC091516.1-201ENST00000549191 703 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 HMGB3P26-201ENST00000560051 582 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC005341.1-201ENST00000571086 708 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 MIR4480-201ENST00000582492 71 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC010632.3-201ENST00000611377 369 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AL161423.1-201ENST00000613700 262 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AL118522.2-201ENST00000616045 615 ntBASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01963-201ENST00000562038 3148 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNA5SP305-201ENST00000362665 119 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNA5SP335-201ENST00000363817 110 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-214P-201ENST00000384130 107 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-434P-201ENST00000384376 107 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.483-201ENST00000384380 101 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 MT-TW-201ENST00000387382 68 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AL009179.1-201ENST00000406085 265 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RPL35AP22-201ENST00000436855 335 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC006466.1-201ENST00000438721 289 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-1218P-201ENST00000458990 108 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC006511.1-201ENST00000470614 315 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RPS27AP1-201ENST00000475545 471 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC108860.1-201ENST00000484521 383 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC007686.1-201ENST00000488511 463 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 HMGB1P35-201ENST00000503360 598 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 COX7A2P2-201ENST00000505291 250 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RBBP4P6-201ENST00000508098 202 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 MTND1P19-201ENST00000511780 315 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-685P-201ENST00000517088 95 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC007991.1-201ENST00000522680 631 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC006116.3-201ENST00000592968 361 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC025574.2-201ENST00000615621 514 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC132825.6-201ENST00000638861 357 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 SLC2A3P1-201ENST00000519666 1451 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 AC074029.4-201ENST00000624796 1859 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms