Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MAGOH2P-202ENST00000584384 429 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 AC023043.2-201ENST00000589678 1026 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 CFTRP2-201ENST00000634304 199 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP54Q70EL1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.97
USP54Q70EL1 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.77□□□□□ -1.97
USP54Q70EL1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP54Q70EL1 EI24P1-201ENST00000416584 867 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.77□□□□□ -1.97
USP54Q70EL1 AC005005.2-201ENST00000420779 380 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 AC129850.1-201ENST00000436203 508 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.77□□□□□ -1.97
USP54Q70EL1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.77□□□□□ -1.97
USP54Q70EL1 AC010265.1-201ENST00000513509 211 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 SNORD116-26-201ENST00000516006 96 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 FAM92A1P1-201ENST00000528023 890 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.77□□□□□ -1.97
USP54Q70EL1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.77□□□□□ -1.97
USP54Q70EL1 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.77□□□□□ -1.97
USP54Q70EL1 AC015849.6-201ENST00000605454 474 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 XIST_intron.1-201ENST00000619444 68 ntBASIC2.77□□□□□ -1.97
USP54Q70EL1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.77□□□□□ -1.97
USP54Q70EL1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP54Q70EL1 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP54Q70EL1 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.76□□□□□ -1.97
USP54Q70EL1 AL138785.1-201ENST00000425821 331 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 USP9YP8-201ENST00000441913 500 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC072039.1-201ENST00000477611 581 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USP54Q70EL1 AC091917.2-201ENST00000505002 744 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.76□□□□□ -1.97
USP54Q70EL1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USP54Q70EL1 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.76□□□□□ -1.97
USP54Q70EL1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.76□□□□□ -1.97
USP54Q70EL1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
USP54Q70EL1 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
USP54Q70EL1 RNU6-14P-201ENST00000384630 106 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 TRIAP1P1-201ENST00000427062 225 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC004866.2-201ENST00000438285 481 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.76□□□□□ -1.97
USP54Q70EL1 HMGB3P21-201ENST00000452483 547 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.76□□□□□ -1.97
USP54Q70EL1 CCNHP1-201ENST00000513311 678 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
USP54Q70EL1 OR8X1P-201ENST00000534542 869 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 AC105036.1-201ENST00000566222 271 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 FAM106CP-201ENST00000582212 507 ntBASIC2.76□□□□□ -1.97
USP54Q70EL1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.76□□□□□ -1.97
USP54Q70EL1 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
USP54Q70EL1 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
USP54Q70EL1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
USP54Q70EL1 MIR9-3-201ENST00000385084 90 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 SNORA26.9-201ENST00000391322 122 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 MIR1287-201ENST00000408492 90 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.75□□□□□ -1.97
USP54Q70EL1 AC008571.1-201ENST00000467232 300 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 RNA5SP309-201ENST00000516670 106 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC2.75□□□□□ -1.97
USP54Q70EL1 AC025423.2-201ENST00000537570 439 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.75□□□□□ -1.97
USP54Q70EL1 AP003117.2-201ENST00000606010 545 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 snoU13.31-201ENST00000607291 104 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 RPL23AP61-201ENST00000623642 466 ntBASIC2.75□□□□□ -1.97
USP54Q70EL1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.75□□□□□ -1.97
USP54Q70EL1 RNU6-1331P-201ENST00000363658 106 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP54Q70EL1 SNORA67.3-201ENST00000384366 140 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.74□□□□□ -1.97
USP54Q70EL1 AC008173.1-201ENST00000418901 264 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 CYCSP49-201ENST00000420810 319 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 AC093084.1-201ENST00000424233 687 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.74□□□□□ -1.97
USP54Q70EL1 RPS27P5-201ENST00000444247 244 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 AC009961.3-201ENST00000449832 765 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC2.74□□□□□ -1.97
USP54Q70EL1 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.74□□□□□ -1.97
USP54Q70EL1 RNU6-826P-201ENST00000516827 104 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC2.74□□□□□ -1.97
USP54Q70EL1 AL713998.2-201ENST00000604538 1198 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.74□□□□□ -1.97
USP54Q70EL1 AC010329.2-201ENST00000595195 2737 ntBASIC2.74□□□□□ -1.97
USP54Q70EL1 FAM35CP-201ENST00000554755 2470 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.73□□□□□ -1.97
USP54Q70EL1 SNORA26.7-201ENST00000391288 122 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.73□□□□□ -1.97
USP54Q70EL1 RPL39P40-201ENST00000445481 146 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.73□□□□□ -1.97
USP54Q70EL1 AC022790.1-201ENST00000522872 204 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC2.73□□□□□ -1.97
USP54Q70EL1 AL355578.1-201ENST00000607405 1328 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
USP54Q70EL1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
USP54Q70EL1 RNU6-225P-201ENST00000384613 103 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 SNORD13-201ENST00000459299 104 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 AC087385.1-201ENST00000475062 312 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.73□□□□□ -1.97
USP54Q70EL1 HMGB3P15-201ENST00000507326 574 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC2.73□□□□□ -1.97
USP54Q70EL1 AC004486.1-201ENST00000546846 233 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 OR4U1P-201ENST00000554958 912 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms