Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.78□□□□□ -2.13
USF3Q68DE3 HIGD1AP11-201ENST00000438361 280 ntBASIC1.78□□□□□ -2.13
USF3Q68DE3 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.78□□□□□ -2.13
USF3Q68DE3 USP9YP8-201ENST00000441913 500 ntBASIC1.78□□□□□ -2.13
USF3Q68DE3 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.78□□□□□ -2.13
USF3Q68DE3 AC103810.1-201ENST00000579873 453 ntBASIC1.78□□□□□ -2.13
USF3Q68DE3 AC073387.2-201ENST00000604797 784 ntBASIC1.78□□□□□ -2.13
USF3Q68DE3 AC025125.1-201ENST00000624743 1922 ntBASIC1.78□□□□□ -2.13
USF3Q68DE3 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.78□□□□□ -2.13
USF3Q68DE3 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
USF3Q68DE3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.77□□□□□ -2.13
USF3Q68DE3 AL512646.1-201ENST00000269395 1077 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 VTRNA1-1-201ENST00000363120 99 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AF274854.1-201ENST00000413236 615 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 RPL7P46-201ENST00000425129 740 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AC009414.1-201ENST00000427200 443 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AC104332.2-201ENST00000429959 156 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.77□□□□□ -2.13
USF3Q68DE3 AC089999.1-201ENST00000460336 374 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.77□□□□□ -2.13
USF3Q68DE3 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC1.77□□□□□ -2.13
USF3Q68DE3 OR8X1P-201ENST00000534542 869 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC1.77□□□□□ -2.13
USF3Q68DE3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
USF3Q68DE3 AC128687.1-201ENST00000605304 619 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.77□□□□□ -2.13
USF3Q68DE3 AP000553.5-201ENST00000641933 54 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
USF3Q68DE3 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
USF3Q68DE3 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
USF3Q68DE3 CKAP2P1-201ENST00000555477 2049 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 ADAM3A-203ENST00000461344 2157 ntBASIC1.77□□□□□ -2.13
USF3Q68DE3 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
USF3Q68DE3 OR5H15-201ENST00000383696 930 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 RNU2-2P-201ENST00000410396 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AL445646.1-201ENST00000431784 216 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC1.76□□□□□ -2.13
USF3Q68DE3 RPL34P26-201ENST00000445636 354 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 GZMAP1-201ENST00000503054 631 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
USF3Q68DE3 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.76□□□□□ -2.13
USF3Q68DE3 RNA5SP200-201ENST00000516360 103 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 RNA5SP309-201ENST00000516670 106 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.15-201ENST00000611544 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AC131902.3-201ENST00000611767 581 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.16-201ENST00000613119 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.12-201ENST00000613778 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.20-201ENST00000613956 192 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.9-201ENST00000615427 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.11-201ENST00000616345 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.2-201ENST00000616535 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.3-201ENST00000617785 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.19-201ENST00000618602 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 RNU2-1-201ENST00000618664 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.6-201ENST00000619225 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.5-201ENST00000619465 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 U2.10-201ENST00000620268 191 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 RNA5SP37-201ENST00000365420 130 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AC092638.1-201ENST00000411966 1275 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.76□□□□□ -2.13
USF3Q68DE3 HSPE1P18-201ENST00000517602 280 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AP003117.2-201ENST00000606010 545 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 YWHAEP7-203ENST00000622054 312 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AL355578.1-201ENST00000607405 1328 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 HSP90AA5P-201ENST00000438353 2192 ntBASIC1.76□□□□□ -2.13
USF3Q68DE3 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
USF3Q68DE3 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 CBWD4P-201ENST00000445695 655 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 TRBV26-201ENST00000456572 344 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 RPL38P4-201ENST00000502376 214 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 LRRC37A5P-203ENST00000580181 585 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.75□□□□□ -2.13
USF3Q68DE3 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC110774.1-201ENST00000623567 2018 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
USF3Q68DE3 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
USF3Q68DE3 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.75□□□□□ -2.13
USF3Q68DE3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.75□□□□□ -2.13
USF3Q68DE3 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC104435.1-201ENST00000483483 166 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 RNU6-1053P-201ENST00000515930 101 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.75□□□□□ -2.13
USF3Q68DE3 AC008687.2-201ENST00000597865 520 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms