Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 ZNF542P-204ENST00000482727 1305 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 SNORD114-22-201ENST00000365423 72 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 RPS3AP9-201ENST00000417027 792 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 AL445685.2-201ENST00000422551 342 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AL353597.2-202ENST00000434901 373 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 MIR3186-201ENST00000577404 85 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 BX664608.1-201ENST00000610519 487 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL7A1Q02388 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 Y_RNA.327-201ENST00000365201 102 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 CACYBPP1-201ENST00000438592 684 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 TMEM248P1-201ENST00000510579 951 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 AP000889.2-201ENST00000532684 490 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC1.46□□□□□ -2.17
COL7A1Q02388 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
COL7A1Q02388 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL7A1Q02388 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL7A1Q02388 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AIMP1P1-201ENST00000418670 937 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AL137159.1-201ENST00000452808 512 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 EIF2S2P4-201ENST00000461070 984 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 XKRY-201ENST00000510392 1100 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 MIR6895-201ENST00000613497 78 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC1.46□□□□□ -2.18
COL7A1Q02388 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
COL7A1Q02388 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL7A1Q02388 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL7A1Q02388 SNORD6-201ENST00000365444 73 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 RNU6-328P-201ENST00000390887 106 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL7A1Q02388 AC012498.1-201ENST00000424037 437 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 RPL9P33-201ENST00000484311 566 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC1.46□□□□□ -2.18
COL7A1Q02388 MIR3683-201ENST00000580847 82 ntBASIC1.46□□□□□ -2.18
COL7A1Q02388 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.46□□□□□ -2.18
COL7A1Q02388 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC1.46□□□□□ -2.18
COL7A1Q02388 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 MTND5P23-201ENST00000430812 1655 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 Y_RNA.354-201ENST00000365448 111 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 AL512430.2-201ENST00000406786 339 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 AC234781.4-201ENST00000419384 244 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 FO393414.1-201ENST00000428697 1184 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.45□□□□□ -2.18
COL7A1Q02388 RPL36AP6-201ENST00000435770 321 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 MTND6P18-201ENST00000439477 513 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 MTAPP1-201ENST00000489154 819 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC1.45□□□□□ -2.18
COL7A1Q02388 AL078603.1-201ENST00000603824 313 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 AL645944.1-201ENST00000603857 493 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 AL359740.1-201ENST00000624340 592 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 MTND5P27-201ENST00000428871 1720 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.45□□□□□ -2.18
COL7A1Q02388 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
COL7A1Q02388 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC1.45□□□□□ -2.18
COL7A1Q02388 CBWD4P-201ENST00000445695 655 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.45□□□□□ -2.18
COL7A1Q02388 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC1.45□□□□□ -2.18
COL7A1Q02388 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.45□□□□□ -2.18
COL7A1Q02388 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.45□□□□□ -2.18
COL7A1Q02388 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.45□□□□□ -2.18
COL7A1Q02388 PSMA3P-201ENST00000555485 635 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 AL356280.1-201ENST00000603614 379 ntBASIC1.45□□□□□ -2.18
COL7A1Q02388 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.45□□□□□ -2.18
COL7A1Q02388 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.45□□□□□ -2.18
COL7A1Q02388 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL7A1Q02388 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.44□□□□□ -2.18
COL7A1Q02388 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.44□□□□□ -2.18
COL7A1Q02388 MIR142-201ENST00000384835 87 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC019129.1-201ENST00000403786 261 ntBASIC1.44□□□□□ -2.18
COL7A1Q02388 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms