Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC2.62□□□□□ -1.99
COL5A3P25940 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC010265.1-201ENST00000513509 211 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AMZ2P1-203ENST00000565833 850 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.62□□□□□ -1.99
COL5A3P25940 AL160237.3-201ENST00000604114 1013 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AL133370.2-201ENST00000619934 439 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
COL5A3P25940 HMGB1P13-201ENST00000406019 642 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
COL5A3P25940 RPL23AP36-201ENST00000413895 458 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 CYCSP49-201ENST00000420810 319 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.61□□□□□ -1.99
COL5A3P25940 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.61□□□□□ -1.99
COL5A3P25940 AL353093.1-201ENST00000441292 436 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.61□□□□□ -1.99
COL5A3P25940 RN7SKP34-201ENST00000516142 244 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 NPM1P52-201ENST00000518264 846 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 AC110588.1-201ENST00000559699 137 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.61□□□□□ -1.99
COL5A3P25940 AL135786.2-201ENST00000608422 615 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.61□□□□□ -1.99
COL5A3P25940 AC000367.1-201ENST00000452711 1766 ntBASIC2.61□□□□□ -1.99
COL5A3P25940 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL5A3P25940 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.61□□□□□ -1.99
COL5A3P25940 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
COL5A3P25940 AC011155.1-201ENST00000316512 456 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 DYNLT3P1-201ENST00000378574 347 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 MIR9-3-201ENST00000385084 90 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL5A3P25940 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.6□□□□□ -1.99
COL5A3P25940 AC008173.1-201ENST00000418901 264 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 USP9YP8-201ENST00000441913 500 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.6□□□□□ -1.99
COL5A3P25940 HSPE1P22-201ENST00000456856 327 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.6□□□□□ -1.99
COL5A3P25940 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC2.6□□□□□ -1.99
COL5A3P25940 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2.6□□□□□ -1.99
COL5A3P25940 AC120053.1-201ENST00000607706 736 ntBASIC2.6□□□□□ -1.99
COL5A3P25940 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL5A3P25940 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL5A3P25940 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL5A3P25940 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.59□□□□□ -1.99
COL5A3P25940 Y_RNA.62-201ENST00000362840 99 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL5A3P25940 RPL5P19-201ENST00000404228 893 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 RNU6-321P-201ENST00000410912 106 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AC098592.2-201ENST00000413158 265 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.59□□□□□ -1.99
COL5A3P25940 OR7L1P-201ENST00000456181 380 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 RNA5SP385-201ENST00000515947 110 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 RNU4-18P-201ENST00000516751 149 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC2.59□□□□□ -1.99
COL5A3P25940 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.59□□□□□ -1.99
COL5A3P25940 MIR5002-201ENST00000584713 97 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AC099778.2-201ENST00000610904 211 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AL137847.3-201ENST00000611521 109 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AP005212.4-201ENST00000614206 710 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 RPL23AP61-201ENST00000623642 466 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 AC084035.1-201ENST00000634543 607 ntBASIC2.59□□□□□ -1.99
COL5A3P25940 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL5A3P25940 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL5A3P25940 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
COL5A3P25940 RN7SKP226-201ENST00000364912 300 ntBASIC2.59□□□□□ -2
COL5A3P25940 RNA5SP105-201ENST00000391123 113 ntBASIC2.59□□□□□ -2
COL5A3P25940 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.59□□□□□ -2
COL5A3P25940 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.59□□□□□ -2
COL5A3P25940 AC108667.1-201ENST00000428618 249 ntBASIC2.59□□□□□ -2
COL5A3P25940 SAR1AP4-201ENST00000429225 591 ntBASIC2.59□□□□□ -2
COL5A3P25940 MTCYBP31-201ENST00000438855 1122 ntBASIC2.59□□□□□ -2
COL5A3P25940 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.59□□□□□ -2
COL5A3P25940 AC091917.2-201ENST00000505002 744 ntBASIC2.59□□□□□ -2
COL5A3P25940 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.59□□□□□ -2
COL5A3P25940 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.59□□□□□ -2
COL5A3P25940 SCARNA17.1-201ENST00000516211 143 ntBASIC2.59□□□□□ -2
COL5A3P25940 SCARNA17.2-201ENST00000516334 143 ntBASIC2.59□□□□□ -2
COL5A3P25940 AC090695.1-201ENST00000561269 1222 ntBASIC2.59□□□□□ -2
COL5A3P25940 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.59□□□□□ -2
COL5A3P25940 AC083899.3-201ENST00000603413 594 ntBASIC2.59□□□□□ -2
COL5A3P25940 AC009570.1-201ENST00000609599 745 ntBASIC2.59□□□□□ -2
COL5A3P25940 SCARNA17.4-201ENST00000614296 143 ntBASIC2.59□□□□□ -2
COL5A3P25940 AC092650.2-201ENST00000619984 902 ntBASIC2.59□□□□□ -2
COL5A3P25940 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.58□□□□□ -2
COL5A3P25940 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
COL5A3P25940 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
COL5A3P25940 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.58□□□□□ -2
COL5A3P25940 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
COL5A3P25940 RNU6-14P-201ENST00000384630 106 ntBASIC2.58□□□□□ -2
COL5A3P25940 ZNF736P10Y-201ENST00000403990 1110 ntBASIC2.58□□□□□ -2
COL5A3P25940 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.58□□□□□ -2
COL5A3P25940 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.58□□□□□ -2
COL5A3P25940 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.58□□□□□ -2
COL5A3P25940 AC113398.2-201ENST00000507630 558 ntBASIC2.58□□□□□ -2
COL5A3P25940 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
COL5A3P25940 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms