Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC087879.1-201ENST00000474343 374 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC092185.1-201ENST00000491371 97 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC147055.4-201ENST00000504399 745 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RPF2P2-201ENST00000504693 896 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 HSPE1P23-201ENST00000509838 286 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC023141.12-201ENST00000512399 199 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 HIGD1AP3-201ENST00000515857 278 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RNU6-759P-201ENST00000516740 103 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 RNU6-232P-201ENST00000517144 64 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 IGHV3-76-201ENST00000522465 295 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 MIR4504-201ENST00000577413 92 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MIR4999-201ENST00000585029 91 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC006116.10-201ENST00000591836 581 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC110760.3-201ENST00000598794 467 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC006539.2-201ENST00000601729 572 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD4P09016 AL358072.1-201ENST00000604156 575 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 BRDTP1-201ENST00000605735 677 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AL607023.1-201ENST00000620045 248 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AC138649.5-201ENST00000637456 137 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 AL392088.2-201ENST00000637607 285 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD4P09016 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD4P09016 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD4P09016 CEP170P1-201ENST00000502249 4587 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 MFSD8-236ENST00000641509 4050 ntBASIC3.29□□□□□ -1.88
HOXD4P09016 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 AL513185.3-201ENST00000433335 1300 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 AL391994.1-201ENST00000254724 282 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 RNA5SP50-201ENST00000363731 107 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 RNA5SP167-201ENST00000365461 116 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 MIR1302-8-201ENST00000408342 128 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 RPS7P13-201ENST00000413955 498 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 RPL31P54-201ENST00000429803 370 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC097713.2-201ENST00000430199 356 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 RPS25P9-201ENST00000435591 252 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 AL591503.2-201ENST00000442314 1005 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 RSL24D1P3-201ENST00000449255 495 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC099563.1-201ENST00000456086 418 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 BZW1P2-201ENST00000473537 826 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 TXNP6-201ENST00000510190 310 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 RAC1P2-201ENST00000511164 579 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 RNY4P37-201ENST00000516225 96 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 RN7SKP209-201ENST00000516888 304 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 RNU6-1261P-201ENST00000517194 104 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC103843.2-201ENST00000530523 682 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 AC011602.1-201ENST00000546484 331 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC006270.2-201ENST00000578523 652 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC090616.2-202ENST00000584248 222 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 PIGPP4-201ENST00000584447 307 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD4P09016 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC026634.1-201ENST00000634369 198 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD4P09016 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD4P09016 AL365440.1-201ENST00000436135 2167 ntBASIC3.28□□□□□ -1.88
HOXD4P09016 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD4P09016 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD4P09016 MTND5P31-201ENST00000419366 1374 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms